GgaEX1005384 @ galGal4
Exon Skipping
Gene
ENSGALG00000001967 | ABCA3
Description
ATP-binding cassette, sub-family A (ABC1), member 3 [Source:HGNC Symbol;Acc:HGNC:33]
Coordinates
chr14:13580057-13582451:-
Coord C1 exon
chr14:13582278-13582451
Coord A exon
chr14:13581411-13581592
Coord C2 exon
chr14:13580057-13580203
Length
182 bp
Sequences
Splice sites
3' ss Seq
AGCTCCCTGTGTCCCTGCAGGGA
3' ss Score
10.79
5' ss Seq
ACGGTGAGC
5' ss Score
9.44
Exon sequences
Seq C1 exon
CAAACGTTGCAGCTGCTGCTGGAGGCTTCCTGTACTTCTTCTCCTACATTCCCTACTTCTTCATCTCGCCTCGCTACGACCTGATGTCCCACAGCCAGAAGCTGGCATCCTGCCTCATCTCCAACGTGGCCATGGCCATGGGAGCACAGCTCATAGGCATGTTTGAAGGAAAAG
Seq A exon
GGACTGGCATTCAATGGAGGGACCTCATGAAACCTGTCAGTGTGGACGACAACTTCACCTTGGCACAAGTCCTGGGGATGCTGCTCCTGGACTCGGTGCTCTATGGCCTGGTGGCCTGGTACGTGGAGGCTGTCTTCCCAGGAGAGTACGGCGTGCCGCAGCCCTGGTACTTCTTCCTGACG
Seq C2 exon
CCCTCGTACTGGTGTGGGCAACCCAGGACTGTCATTGGGAAAGAGAAGGAGGAGGAGGAAGACCCCGAGAAAGCCCTGAAGAGCCAATACATCGAGGAGGAGCCTGCTGACCTCGTGTCGGGGATCAAAATCAAGCACCTTTCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001967_CASSETTE3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.306
Domain overlap (PFAM):
C1:
PF126982=ABC2_membrane_3=FE(13.0=100)
A:
PF126982=ABC2_membrane_3=PD(8.9=65.6)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCTGGAGGCTTCCTGTACTT
R:
TTGGCTCTTCAGGGCTTTCTC
Band lengths:
245-427
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]