RnoEX0004776 @ rn6
Exon Skipping
Gene
ENSRNOG00000027505 | Abca15
Description
ATP-binding cassette, subfamily A (ABC1), member 15 [Source:RGD Symbol;Acc:1305981]
Coordinates
chr1:190109952-190121475:+
Coord C1 exon
chr1:190109952-190110086
Coord A exon
chr1:190112881-190113010
Coord C2 exon
chr1:190121321-190121475
Length
130 bp
Sequences
Splice sites
3' ss Seq
TTATGGGCTTCCCCCAACAGGTA
3' ss Score
10.6
5' ss Seq
CAGGTAGGT
5' ss Score
10.28
Exon sequences
Seq C1 exon
CACTCTTACTGGTTTGGAGAATCACGTCAACAAAAACCCGAAATAACCCAATTTTGTAAGAGAGTTGAAAGCAAGTATTTTGAAGTTGAACCAACTGATTTGACAGCAGGCATCCAGATCAAACACCTACACAAG
Seq A exon
GTATTCCAAGAGAATAACATCACTAAAGTCGCCATCAATGACTTGTCTTTGAACGTATATGAGGGACAGATTACTGTTCTTTTAGGACATAATGGGGCAGGAAAGTCCACTACTCTGTCCATCCTCTCAG
Seq C2 exon
GTCTCTATCCCCCGACCAGTGGAGAGGCCTATGTTCATGGAGAAGACATCTCACAGCATATGGATCAAATTAGGAATTTCTTGGGCTTATGTCCTCAGCAGAACCTGTTGTTTGATCACTTGACAGTATCAGAACACCTTTATTTCTACTGCAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000027505-'13-12,'13-11,14-12
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0000522=ABC_tran=PU(22.1=72.7)
C2:
PF0000522=ABC_tran=FE(35.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTGGTTTGGAGAATCACGTCA
R:
CAAACAACAGGTTCTGCTGAGG
Band lengths:
242-372
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]