MmuEX0002955 @ mm10
Exon Skipping
Gene
ENSMUSG00000054746 | Abca15
Description
ATP-binding cassette, sub-family A (ABC1), member 15 [Source:MGI Symbol;Acc:MGI:2388709]
Coordinates
chr7:120350757-120359820:+
Coord C1 exon
chr7:120350757-120350891
Coord A exon
chr7:120354462-120354591
Coord C2 exon
chr7:120359666-120359820
Length
130 bp
Sequences
Splice sites
3' ss Seq
TTATGGGCTTCCCCCAACAGGTA
3' ss Score
10.6
5' ss Seq
CAGGTAGGT
5' ss Score
10.28
Exon sequences
Seq C1 exon
CACTCTTACTGGTTTGGAGAACCACCTCAACAAAAACTAGAAATCACCCAATTTTATGAGAGAGTTGAAAGCAAGTACTTTGAAGCTGAACCAACTGATTTGACAGCAGGCATACAGATCAAACACCTACACAAG
Seq A exon
GTATTCCAAAAGAATAACACCACCAAGGTCGCCATCAAAGACTTGTCTTTGAACTTATATGAGGGACAGGTCACTGTTCTTCTAGGACATAATGGGGCAGGAAAATCCACTACTCTGTCCATCCTCTCAG
Seq C2 exon
GTCTCTATCCTCCGACCAGTGGAGAGGCCTATGTCCATGGAGAAGACATCTCCCAGCATATGGATCAAGTCAGGAATTCCTTGGGCTTATGTCCTCAGCAGAACCTGTTGTTTGATCACTTGACAGTATCCGAACACCTTTATTTCTACTGCAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000054746_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.019
Domain overlap (PFAM):
C1:
NO
A:
PF0000522=ABC_tran=PU(22.1=72.7)
C2:
PF0000522=ABC_tran=FE(35.2=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTTGGAGAACCACCTCAACA
R:
AGTGATCAAACAACAGGTTCTGCT
Band lengths:
244-374
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types