Special

MmuEX0002955 @ mm9

Exon Skipping

Gene
ENSMUSG00000054746 | Abca15
Description
ATP-binding cassette, sub-family A (ABC1), member 15 [Source:MGI Symbol;Acc:MGI:2388709]
Coordinates
chr7:127494271-127503334:+
Coord C1 exon
chr7:127494271-127494405
Coord A exon
chr7:127497976-127498105
Coord C2 exon
chr7:127503180-127503334
Length
130 bp
Sequences
Splice sites
3' ss Seq
TTATGGGCTTCCCCCAACAGGTA
3' ss Score
10.6
5' ss Seq
CAGGTAGGT
5' ss Score
10.28
Exon sequences
Seq C1 exon
CACTCTTACTGGTTTGGAGAACCACCTCAACAAAAACTAGAAATCACCCAATTTTATGAGAGAGTTGAAAGCAAGTACTTTGAAGCTGAACCAACTGATTTGACAGCAGGCATACAGATCAAACACCTACACAAG
Seq A exon
GTATTCCAAAAGAATAACACCACCAAGGTCGCCATCAAAGACTTGTCTTTGAACTTATATGAGGGACAGGTCACTGTTCTTCTAGGACATAATGGGGCAGGAAAATCCACTACTCTGTCCATCCTCTCAG
Seq C2 exon
GTCTCTATCCTCCGACCAGTGGAGAGGCCTATGTCCATGGAGAAGACATCTCCCAGCATATGGATCAAGTCAGGAATTCCTTGGGCTTATGTCCTCAGCAGAACCTGTTGTTTGATCACTTGACAGTATCCGAACACCTTTATTTCTACTGCAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000054746-'12-12,'12-11,13-12
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact





	

	
ORF disruption upon sequence exclusion





No structure available

		

			
Features


			

				
Disorder rate (Iupred):
  C1=0.000 A=0.000 C2=0.019
 
                        

				
Domain overlap (PFAM):

					





						

							
C1:
NO

							
A:
PF0000522=ABC_tran=PU(22.1=72.7)

							
C2:
PF0000522=ABC_tran=FE(35.2=100)

						

					

				








    
Main Inclusion Isoform:
ENSMUSP00000075621





     
                   









    
Main Skipping Isoform:
NA





     
      









    
Other Inclusion Isoforms:
ENSMUSP00000112821
          









    
Other Skipping Isoforms:
NA
  



Associated events







Other assemblies


mm10




Conservation


Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
chr25:19439113-19439242 
BtaEX6109113
([1])
Chicken
(galGal4)
chr14:13579349-13579478 
HIGH PSI
GgaEX6013153
(ABCA3)
Chicken
(galGal3)
chr14:14344732-14344861 
HIGH PSI
GgaEX6013153
(E1BVQ5_CHICK)
Zebrafish
(danRer10)
chr3:12501011-12501140 
HIGH PSI
DreEX0009922
(abca3b)
Fruitfly
(dm6)
No conservation detected




Primers PCR

	

		

			
Suggestions for RT-PCR validation

			

				
F: 
GTTTGGAGAACCACCTCAACA

				
R: 
AGTGATCAAACAACAGGTTCTGCT

				
Band lengths: 
244-374

			

		

	





	
Functional annotations
(Submit an annotation)

	


There are 0 annotated functions for this event 


		










GENOMIC CONTEXT[edit]












INCLUSION PATTERN[edit]






SPECIAL DATASETS
  • Pre-implantation embryo development
  • Neural differentiation time course
  • Muscular differentiation time course
  • Spermatogenesis cell types
  • Reprogramming of fibroblasts to iPSCs
  • Hematopoietic precursors and cell types






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