MmuEX6013728 @ mm9
Exon Skipping
Gene
ENSMUSG00000054746 | Abca15
Description
ATP-binding cassette, sub-family A (ABC1), member 15 [Source:MGI Symbol;Acc:MGI:2388709]
Coordinates
chr7:127489490-127498105:+
Coord C1 exon
chr7:127489490-127489668
Coord A exon
chr7:127494271-127494405
Coord C2 exon
chr7:127497976-127498105
Length
135 bp
Sequences
Splice sites
3' ss Seq
ATTTTTATTCCCTTAATTAGCAC
3' ss Score
5.04
5' ss Seq
AAGGTATTC
5' ss Score
6.8
Exon sequences
Seq C1 exon
AAACTGGAATGAAATGGAGTAACATATTCCTATCCACGGATTCAGACAGCTTTTTATTTGCCTACGTGCTAGGGATGCTTTTAGCTGATGCTTTCATATATGGCCTTGTGGCCTGGTATATAGAAGCTGTCTTTCCAGGAGAGTACGGTGTGCCCAAGCCGTGGAATTTTTTCTTGATG
Seq A exon
CACTCTTACTGGTTTGGAGAACCACCTCAACAAAAACTAGAAATCACCCAATTTTATGAGAGAGTTGAAAGCAAGTACTTTGAAGCTGAACCAACTGATTTGACAGCAGGCATACAGATCAAACACCTACACAAG
Seq C2 exon
GTATTCCAAAAGAATAACACCACCAAGGTCGCCATCAAAGACTTGTCTTTGAACTTATATGAGGGACAGGTCACTGTTCTTCTAGGACATAATGGGGCAGGAAAATCCACTACTCTGTCCATCCTCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000054746-'3-11,'3-10,12-11=AN
Average complexity
A_C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF126982=ABC2_membrane_3=PD(8.8=65.0)
A:
NO
C2:
PF0000522=ABC_tran=PU(22.1=72.7)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCCCTACCCTCTTAGAGTGTG
R:
TGAGAGGATGGACAGAGTAGTGG
Band lengths:
229-364
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: