MmuEX6013729 @ mm9
Exon Skipping
Gene
ENSMUSG00000054746 | Abca15
Description
ATP-binding cassette, sub-family A (ABC1), member 15 [Source:MGI Symbol;Acc:MGI:2388709]
Coordinates
chr7:127489490-127494405:+
Coord C1 exon
chr7:127489490-127489650
Coord A exon
chr7:127489653-127489668
Coord C2 exon
chr7:127494271-127494405
Length
16 bp
Sequences
Splice sites
3' ss Seq
TACGGTGTGCCCAAGCCGTGGAA
3' ss Score
-13.57
5' ss Seq
ATGGTGAGT
5' ss Score
10.13
Exon sequences
Seq C1 exon
AAACTGGAATGAAATGGAGTAACATATTCCTATCCACGGATTCAGACAGCTTTTTATTTGCCTACGTGCTAGGGATGCTTTTAGCTGATGCTTTCATATATGGCCTTGTGGCCTGGTATATAGAAGCTGTCTTTCCAGGAGAGTACGGTGTGCCCAAGCCG
Seq A exon
GAATTTTTTCTTGATG
Seq C2 exon
CACTCTTACTGGTTTGGAGAACCACCTCAACAAAAACTAGAAATCACCCAATTTTATGAGAGAGTTGAAAGCAAGTACTTTGAAGCTGAACCAACTGATTTGACAGCAGGCATACAGATCAAACACCTACACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000054746-'3-10,'3-9,11-10=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF126982=ABC2_membrane_3=PD(8.8=65.0)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTTGTTTTCCAGCCTGCACAG
R:
TGTTGAGGTGGTTCTCCAAAC
Band lengths:
102-118
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: