RnoEX0004783 @ rn6
Exon Skipping
Gene
ENSRNOG00000027505 | Abca15
Description
ATP-binding cassette, subfamily A (ABC1), member 15 [Source:RGD Symbol;Acc:1305981]
Coordinates
chr1:190112881-190124344:+
Coord C1 exon
chr1:190112881-190113010
Coord A exon
chr1:190121321-190121475
Coord C2 exon
chr1:190124189-190124344
Length
155 bp
Sequences
Splice sites
3' ss Seq
CATCTTCTGCCTGATTCTAGGTC
3' ss Score
10.29
5' ss Seq
AGGGTAAGC
5' ss Score
9.04
Exon sequences
Seq C1 exon
GTATTCCAAGAGAATAACATCACTAAAGTCGCCATCAATGACTTGTCTTTGAACGTATATGAGGGACAGATTACTGTTCTTTTAGGACATAATGGGGCAGGAAAGTCCACTACTCTGTCCATCCTCTCAG
Seq A exon
GTCTCTATCCCCCGACCAGTGGAGAGGCCTATGTTCATGGAGAAGACATCTCACAGCATATGGATCAAATTAGGAATTTCTTGGGCTTATGTCCTCAGCAGAACCTGTTGTTTGATCACTTGACAGTATCAGAACACCTTTATTTCTACTGCAGG
Seq C2 exon
GTAAAAGGAGTGCCTCAAAATATGTGTCTTGAGGAAACTAACAATATGCTGTCAGCTTTTAACCTGACAGAAAAGCGTGATGCATTTTCAAAGTCATTGAGTGGAGGCATGAAGCGCAAACTCGCCATCATAATAGCCCTGATAGGGGGCTCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000027505_CASSETTE3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0000522=ABC_tran=PU(22.1=72.7)
A:
PF0000522=ABC_tran=FE(35.2=100)
C2:
PF0000522=ABC_tran=FE(35.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTCGCCATCAATGACTTGTCT
R:
CAGGGCTATTATGATGGCGAGT
Band lengths:
245-400
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]