RnoEX0004816 @ rn6
Exon Skipping
Gene
ENSRNOG00000039656 | Abca17
Description
ATP-binding cassette, subfamily A (ABC1), member 17 [Source:RGD Symbol;Acc:1560494]
Coordinates
chr10:13631456-13647003:-
Coord C1 exon
chr10:13646809-13647003
Coord A exon
chr10:13632836-13632965
Coord C2 exon
chr10:13631456-13631626
Length
130 bp
Sequences
Splice sites
3' ss Seq
CCTGCTAAACTTCATGACAGGAA
3' ss Score
5.16
5' ss Seq
TAGGTGAGA
5' ss Score
6.95
Exon sequences
Seq C1 exon
GTCTATAAAGAGAAGGTGCCCCTGTTGGCTGTGAACAAGGTGTCCTTTGTCGTTAAAGAAAAAGAATGCTTTGGCCTTCTTGGCCTCAATGGAGCTGGGAAGACGTCCATTTTCAACATGCTGACCAGGGAGCAGCCCATCACTTCAGGGGATGCCTTTGTCAAGGGTTTCAACATCAGGACTGACATGGCGAAG
Seq A exon
GAAGAGAGATGCTTGTCATGCATGCCCGTATCCGGGGCATCCCCGAGTGCCACATCAAAACCTGTGTGGACATGATCCTTGAGAACTTACTCATGTGCGTGTATGCAGACAAGCTGGTGAAGACCTATAG
Seq C2 exon
TGACGGCAACAAGCGCGTGCTGAGCACCGCCATCGCCCTCCTCGGAGAGCCCACGGTCATCCTGCTAGACGAGCCATCCACTGGCATGGACCCTGTGGCTCGGCGCCTGGTGTGGGATGCTGTGGGACGGGTCCGTGAGTCTGGCAAGACCATCGTCATCACCTCTCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000039656-'41-47,'41-46,42-47
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0000522=ABC_tran=PU(37.2=83.1)
A:
PF0000522=ABC_tran=FE(42.8=100)
C2:
PF0000522=ABC_tran=PD(18.6=46.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGGCTGTGAACAAGGTGTCC
R:
CTCGTCTAGCAGGATGACCGT
Band lengths:
244-374
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]