BtaEX6108017 @ bosTau6
Exon Skipping
Description
uncharacterized protein LOC777692 [Source:RefSeq peptide;Acc:NP_001071620]
Coordinates
chr25:1934373-1944675:+
Coord C1 exon
chr25:1934373-1934567
Coord A exon
chr25:1943089-1943276
Coord C2 exon
chr25:1944505-1944675
Length
188 bp
Sequences
Splice sites
3' ss Seq
GGGCTATGCTCCAATTCCAGGTG
3' ss Score
7.17
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
Exon sequences
Seq C1 exon
GTCTATTCCAGGAAGGTGCCTCCACTGGCTGTGAACAAGGTTTCCTTCACTGTTCAAGCAGAGGAGTGCTTTGGTCTTCTTGGCCTCAATGGAGCTGGGAAAACTACCATTTTCAAGATATTGACTGGGGAAGAGTCTATCACCTCTGGGGACGCCTTTGTCAACAGCATCAGCGTCAGCTCTGACTTGAGGAAG
Seq A exon
GTGCGACAGTGGATCGGCTACTGTCCCCAGGTCGATGCCCTGCTGGACCACATGACGGGCAAGGAGACGCTGGTCATGTTCTCCCGGCTCCGGGGCATCCCTGAGCGTCACATCAGCTCCTGTGTGGACCAAATTCTTGATGACTTGCTCATGTACACGTACGCCGACAAATTGGTGAAGACCTACAG
Seq C2 exon
TGGCGGCAACAGGCGGAAGCTGAGTGCTGGCATTGCCCTGCTGGGAGAGCCTGTGGTCATCTTCCTGGACGAGCCATCCACTGGCATGGATCCTGTGGCCCGGCGTCTGCTCTGGGGCACTGTGGCACGGGCCCGAAAGTCCGGCAAGGCCATCGTCATCACCTCCCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000034643-'37-35,'37-34,38-35=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0000522=ABC_tran=PU(37.2=83.1)
A:
PF0000522=ABC_tran=FE(42.8=100)
C2:
PF0000522=ABC_tran=PD(18.6=46.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TATTCCAGGAAGGTGCCTCCA
R:
AGGAAGATGACCACAGGCTCT
Band lengths:
258-446
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]