Special

MmuEX0002967 @ mm9

Exon Skipping

Gene
ENSMUSG00000035435 | Abca17
Description
ATP-binding cassette, sub-family A (ABC1), member 17 [Source:MGI Symbol;Acc:MGI:3625331]
Coordinates
chr17:24402809-24416187:-
Coord C1 exon
chr17:24415993-24416187
Coord A exon
chr17:24404495-24404682
Coord C2 exon
chr17:24402809-24402979
Length
188 bp
Sequences
Splice sites
3' ss Seq
CTTGGGCTGTTGTAACTCAGGTG
3' ss Score
5.33
5' ss Seq
TAGGTGAGA
5' ss Score
6.95
Exon sequences
Seq C1 exon
GTCTATAAAGACAAGGTACCCCTGTTGGCTGTGAACAAGGTGTCCTTTGTTGTTAAAGAAGAAGAATGCTTTGGCCTTCTTGGTCTCAATGGAGCTGGGAAGACTTCCATTTTCAACATGCTGACCAGCGAGCAGCCCATCACCTCTGGGGATGCCTTTGTCAAGGGTTTCAACATCAAGTCTGACATAGCGAAG
Seq A exon
GTGCGGCAGTGGATTGGTTACTGTCCTGAGTTTGATGCCTTGCTAAACTTCATGACAGGACGAGAGATGCTTGTCATGTATGCCCGTATCCGGGGCATCCCTGAATGCCACATTAAAGCCTGTGTCGACCTGATCCTTGAGAACTTACTCATGTGTGTGTGTGCAGACAAGCTGGTGAAGACCTATAG
Seq C2 exon
TGGTGGTAACAAGCGCATGCTAAGCACTGGCATTGCCCTCGTTGGAGAGCCTGCAGTCATCCTGCTAGATGAACCGTCCACTGGCATGGACCCTGTGGCTCGGCGCCTGCTGTGGGACACTGTGGAACGGGTCCGTGAGTCTGGCAAGACCATCGTCATCACCTCCCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000035435_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact





	

	
ORF disruption upon sequence exclusion





No structure available

		

			
Features


			

				
Disorder rate (Iupred):
  C1=0.000 A=0.000 C2=0.000
 
                        

				
Domain overlap (PFAM):

					





						

							
C1:
PF0000522=ABC_tran=PU(37.2=83.1)

							
A:
PF0000522=ABC_tran=FE(42.8=100)

							
C2:
PF0000522=ABC_tran=PD(18.6=46.6)

						

					

				








    
Main Inclusion Isoform:
ENSMUSP00000046218





     
                   









    
Main Skipping Isoform:
NA





     
      









    
Other Inclusion Isoforms:
ENSMUSP00000112538
          









    
Other Skipping Isoforms:
NA
  



Associated events






Other assemblies


mm10




Conservation


Human
(hg38)
No conservation detected
Human
(hg19)
chr16:2472581-2472768 
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
chr25:1943089-1943276 
BtaEX6108017
([1])
Chicken
(galGal4)
chr14:13570529-13570716 
HIGH PSI
GgaEX6013160
(ABCA3)
Chicken
(galGal3)
chr14:14335912-14336099 
HIGH PSI
GgaEX6013160
(E1BVQ5_CHICK)
Zebrafish
(danRer10)
chr3:12538006-12538193 
HIGH PSI
DreEX0009928
(abca3b)
Fruitfly
(dm6)
No conservation detected




Primers PCR

	

		

			
Suggestions for RT-PCR validation

			

				
F: 
TTGGCTGTGAACAAGGTGTCC

				
R: 
TGCCAGTGGACGGTTCATCTA

				
Band lengths: 
257-445

			

		

	





	
Functional annotations
(Submit an annotation)

	


There are 0 annotated functions for this event 


		










GENOMIC CONTEXT[edit]












INCLUSION PATTERN[edit]






SPECIAL DATASETS
  • Pre-implantation embryo development
  • Neural differentiation time course
  • Muscular differentiation time course
  • Spermatogenesis cell types
  • Reprogramming of fibroblasts to iPSCs
  • Hematopoietic precursors and cell types






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