RnoEX0004822 @ rn6
Exon Skipping
Gene
ENSRNOG00000039656 | Abca17
Description
ATP-binding cassette, subfamily A (ABC1), member 17 [Source:RGD Symbol;Acc:1560494]
Coordinates
chr10:13657101-13660355:-
Coord C1 exon
chr10:13660049-13660355
Coord A exon
chr10:13657441-13657714
Coord C2 exon
chr10:13657101-13657305
Length
274 bp
Sequences
Splice sites
3' ss Seq
TGCCTTTGGCTTCCTCCCAGGTT
3' ss Score
8.55
5' ss Seq
CCAGTGCGT
5' ss Score
5.65
Exon sequences
Seq C1 exon
TTCTCTCTCCTGTGCCAACAATTCTATGCCATGCTCCTGAAAAAGGTCGCGTTTTCTCGGCGCAACTGGATGCTGGTGCTGTCTGTGCAGATTCTGCTGCCTCTGGTGATCATTATGTTAAGCCTCAGTTTTTTCAACTTCAAATTAAGGAAGCTGGATAACGTGCCCCTGGAGCTGACCTTGCAAACCTATGGTCAGACCATTGTTCCGTTTTTTATTGCCGAGAACTCCCGCCTGGATCCTCAGCTTTCAGATAACTTTGTAAAAATGCTCGTGGCTGCAGGACAGGTTCCTTTGCGTATTCAAG
Seq A exon
GTTCTGTAGAGAACTTCCTACTGAAGAAGGCCAAGGAGGCTCCTGAGGACTTCGATAAGCTCTACGTAGTGGCAGCTTCTTTCGAAGACGTAAATGACCACACCACAGTGAAGGCGCTGTTCAACAACCAGGCCTACCACTCCCCCAGCCTGGCTCTGGCTCTGGTGGACAATGTTCTCTTCAAGTTGCTTTCTGGTGCCAATGCTTCCATTACCACAACCAACTATCCTCAGCCTCAGACAGCCATGGAGCTCTCAGAGACTATCCTGTACCA
Seq C2 exon
GGGCCCTAAAGGACACTACCTTGTGGTCAACTTCCTTTTTGGAATAGCTTTTCTGTCAAGCTCTTTCTCCATCTTGACGGTCGGAGAGAAGAGCATTAAGTCCAAGAACCTCCAGTTCCTCAGCGGAGTCAGCATGGCTGCGTTCTGGCTCTCCGCTCTGCTGTGGGACCTCATCTCTTTCCTTGTTCCCACTCTGCTGCTGGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000039656_CASSETTE2
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF126982=ABC2_membrane_3=PU(19.6=76.7)
A:
PF126982=ABC2_membrane_3=FE(22.6=100)
C2:
PF126982=ABC2_membrane_3=FE(16.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGATTCTGCTGCCTCTGGTG
R:
TCCGACCGTCAAGATGGAGAA
Band lengths:
305-579
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]