GgaEX6013157 @ galGal4
Exon Skipping
Gene
ENSGALG00000001967 | ABCA3
Description
ATP-binding cassette, sub-family A (ABC1), member 3 [Source:HGNC Symbol;Acc:HGNC:33]
Coordinates
chr14:13573424-13574985:-
Coord C1 exon
chr14:13574682-13574985
Coord A exon
chr14:13574119-13574392
Coord C2 exon
chr14:13573424-13573628
Length
274 bp
Sequences
Splice sites
3' ss Seq
ACAGCAGTGGTGTTCTGCAGGTG
3' ss Score
5.17
5' ss Seq
GGAGTACGT
5' ss Score
5.17
Exon sequences
Seq C1 exon
TTCTACCTGTGCTGCCAGCAGTTCTACGCCATGTTCATGAAGCGAGCCATGTACAGCTGGCGCAACTGGAAGATGGTGGCAGCGCAGTTCCTCGTGCCTCTGATCTTCACCGCCTTTGCCCTCATCGTGGCCAAGACCTTCCCGGGGCCCAGGGACTCCTCCATGCTGAGGCTGACGCTGGAGCCCTACGGCCAGACCATCGTGCCTTTCTCTGTCCCCACCGCCTCAGGGCTGCCGCAGAGGCTGGCAGAGCAGTACGTGGAGCTGCTGGATGCGCAGCACCAGTCACCACTGGAGGTGCCAG
Seq A exon
GTGGTCTGGAGGAGTACCTCATCTCGAGAGCGTCCGAGGAGGGGGGAGCCTTCAATGAGCACTACATCGCTGCCGCCTCCTTCGAAGGAGCTGGCAACCACACCGTGGTCACTGCACTGTTCAACAACCAGGCCTACCACTCCCCAGCCACCGCCCTCATGCTGGCTGACAATGCTGTCTTCAGGGTGCTGATGGGCCCCAACGCTTCCATCACGGTCACCAACTACCCTCAGCCACGCAACATCACCGAGAAGGCCAAGGACCAGCTCATGGA
Seq C2 exon
AGGCCAGACCGGGTTTGCCATCGCCATCAACTTGCTGTATGGCATGGCCTCGCTCGCCAGCACCTTTGCTCTCCTGCTGGTCAGTGAGCGGGCCATCAAGGCCAAGCACGTCCAGTTCGTCAGCGGTGTCTACGTGGTCAACTTCTGGCTGTCTGCCTTGCTCTGGGACATCATCAATTTCCTCATTCCGTGTGCTCTGATGCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001967-'24-30,'24-29,25-30=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.033 C2=0.000
Domain overlap (PFAM):
C1:
PF126982=ABC2_membrane_3=PU(19.7=77.5)
A:
PF126982=ABC2_membrane_3=FE(22.7=100)
C2:
PF126982=ABC2_membrane_3=FE(17.0=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATCGTGCCTTTCTCTGTCCC
R:
TCAGAGCACACGGAATGAGGA
Band lengths:
307-581
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]