RnoEX6046392 @ rn6
Exon Skipping
Gene
ENSRNOG00000050057 | Abca3
Description
ATP binding cassette subfamily A member 3 [Source:RGD Symbol;Acc:1307174]
Coordinates
chr10:13768280-13771027:+
Coord C1 exon
chr10:13768280-13768583
Coord A exon
chr10:13769260-13769533
Coord C2 exon
chr10:13770823-13771027
Length
274 bp
Sequences
Splice sites
3' ss Seq
GACACTGCATTACTCCACAGGTG
3' ss Score
8.71
5' ss Seq
CGAGTACGT
5' ss Score
7.42
Exon sequences
Seq C1 exon
CTTGCCCTCCACTGCCAGCAGTTCTGGGCCATGTTCCTGAAGAAGGCTGCGTACAGCTGGCGGGAATGGAGGATGGTAGCCGCTCAGATCCTGGTCCCCGTGACCTGCCTCACCCTGGCCCTCCTGGCTATCAACTACACCTCAGAGATCTTTGATGACCCTCCCCTGAAGCTAAGCCTGAACGAGTATGGTACAACAGTTGTGCCCTTCTCAGTCCCAGGCACATCCAGGCTGGGCCAGCAGCTGTCTGAGCATCTAAGAGACATGCTGCAGGCTGAGAGGCAGGAGCCCCGTGAAGTGCTAG
Seq A exon
GTGACCTAGAGGAGTTCCTGGTTTTCAGGGCCTCAGTGGAAGGGGGCGGCTTTAATGAGAGGTGCCTGGTAGCGACATCCTTCAAAGACAGTGGAGAGCGGACAGTGGTCACTGCCCTGTTCAACAACCAGGCATACCACTCCCCAGCCACTGCCCTGGCCATTGTGGACAACCTTCTGTTCAAGCTTCTGTGTGGCCCTCGGGCCTCCATTGAGATCTCCAACTATCCCCAGCCCCGGAGCACCCTGCAGGTCGCCAAGGACCAGTTCAACGA
Seq C2 exon
GGGCCGGAAGGGATTTGACATTGCCCTCAATTTGCTCATCGCCATGGCATTTCTGGCCAGCACGTTTTCGATCCTGGCAGTCAGTGAGAGGGCCGTCCAAGCCAAGCACGTTCAGTTTGTGAGCGGTGTCCATGTGGCTACTTTCTGGCTCTCTGCTCTGCTGTGGGACCTCATCTCTTTCCTCGTTCCCAGTCTACTACTTCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000050057-'28-35,'28-33,29-35=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.010 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF126982=ABC2_membrane_3=PU(19.7=77.5)
A:
PF126982=ABC2_membrane_3=FE(22.7=100)
C2:
PF126982=ABC2_membrane_3=FE(17.0=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGTTCCTGAAGAAGGCTGCG
R:
AATGTCAAATCCCTTCCGGCC
Band lengths:
296-570
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]