DreEX0009925 @ danRer10
Exon Skipping
Gene
ENSDARG00000100524 | abca3b
Description
ATP-binding cassette, sub-family A (ABC1), member 3b [Source:ZFIN;Acc:ZDB-GENE-050517-2]
Coordinates
chr3:12520449-12527051:+
Coord C1 exon
chr3:12520449-12520758
Coord A exon
chr3:12524559-12524817
Coord C2 exon
chr3:12526847-12527051
Length
259 bp
Sequences
Splice sites
3' ss Seq
CCTGTGGTTTGTGTGTTTAGATT
3' ss Score
8.24
5' ss Seq
TGAGTACGT
5' ss Score
4.8
Exon sequences
Seq C1 exon
GCCAGACTGTATATGCAGCAGTTCTACGCCATGTTCCTGAAGAGGGCGCTCTACAGCTGGCGCAACTGGAAAGTGATGGTGGCTCAGTTTCTGGTGCCGCTCATCTTCACAGTGTTGGCCCTCGTAGTGGCCCGTAGCCTGCCCAGCAGCCATTCTTCACCACAGCTCCGCCTGGCGCTAAAACAATACGGCCAAACCCATGTACCTGTTGCTGTTGAAGCTAACGCCGGGCCACTGGCTTCACTTCTGGCTGAAATCTACACCACACAGCTGCCTTCCCAGAATGCCATTGCTGCACCTAATATAACAG
Seq A exon
ATTTCTCGGAGTATGTGCTTTATAATGCTCAGAGGGAGGGCGGAGCTTTCAACGAGCACTGTGTGGTCGGCGCCGCTTTCAGAAGCAGTGATGTTATCGGATACTTCAATAATCAGGGCTATCATACACCCGCGACAGCGCTCATGCTGGTGGACAACGCTCTCTTCAAGCTCCTAGCCGGACCCAATGCCTCCATCCAGACTGGAAATGACCCCATGCCACGCAATGTGTCCGAGACGGCCCAGAGCCAGCTCTCTGA
Seq C2 exon
GAGTCAGACAGGCTTTGCCATCGCCATAAACCTGATGTACGGCATGGCTTCATTAGCCAGCACCTTTGCCCTGCTCCTCGTGTCCGAGCGCTCGGTCAAGTCCAAGCACGTGCAGCAGGTCAGCGGGGTTTACCTCACCAACTTCTGGTTCTCTGCCCTGCTGTGGGACCTCATCAACTTCCTGTTACCCTGCTTGCTCATGCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000100524-'23-25,'23-23,25-25
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.103 C2=0.000
Domain overlap (PFAM):
C1:
PF126982=ABC2_membrane_3=PU(20.4=77.9)
A:
PF126982=ABC2_membrane_3=FE(21.6=100)
C2:
PF126982=ABC2_membrane_3=FE(17.1=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCCAAACCCATGTACCTGTT
R:
GTTGATGAGGTCCCACAGCAG
Band lengths:
299-558
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]