RnoEX0004966 @ rn6
Exon Skipping
Gene
ENSRNOG00000004147 | Abca8a
Description
ATP-binding cassette, subfamily A (ABC1), member 8a [Source:RGD Symbol;Acc:1307333]
Coordinates
chr10:98324582-98364971:-
Coord C1 exon
chr10:98364833-98364971
Coord A exon
chr10:98364235-98364325
Coord C2 exon
chr10:98324582-98324701
Length
91 bp
Sequences
Splice sites
3' ss Seq
CACTGCTTCTTCCTTTTCAGATA
3' ss Score
11.64
5' ss Seq
AAGGTAGGC
5' ss Score
10.08
Exon sequences
Seq C1 exon
ATTTTCCTCCTGGATGAGCCCACTGCTGGGCTGGATCCCTTTTCAAGGCACCGGGTGTGGAATCTCTTGAAGGAGCGCAAAGCAGACCGCGTGGTCCTCTTCAGCACACAGTTCATGGATGAAGCTGACATCCTGGCTG
Seq A exon
ATAGGAAAGTGTTCATCTCCCAGGGGAAGCTGAGGTGTGCAGGATCTTCCTTGTTTCTGAAGAAAAAATGGGGGATTGGTTATCACTTAAG
Seq C2 exon
GCAGGCGATCCAGGCCACCTTCGCAAACACAGAGAGGGGCGCCCTCCTGACCACCCATTACATGGCAGAGGCTGAGGCTGTGTGTGACCGCGTGGCCATCATGGTGTCTGGGAAGCTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000004147_MULTIEX1-15/37=14-35
Average complexity
C3
Mappability confidence:
93%=94=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0000522=ABC_tran=PD(5.5=17.0)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGGTCCTCTTCAGCACACAG
R:
TCAGCTTCCCAGACACCATGA
Band lengths:
168-259
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]