GgaEX6016339 @ galGal3
Exon Skipping
Description
NA
Coordinates
chr18:7953315-7954691:-
Coord C1 exon
chr18:7954553-7954691
Coord A exon
chr18:7954010-7954100
Coord C2 exon
chr18:7953315-7953410
Length
91 bp
Sequences
Splice sites
3' ss Seq
TTGTATTCCTATCTCCTCAGATC
3' ss Score
10.5
5' ss Seq
AAGGTAAAA
5' ss Score
8.38
Exon sequences
Seq C1 exon
GTGCTGCTCTTGGACGAGCCAATGGTGGGGCTGGATCCTTGCTCCAGGCACCACGTGTGGGAGCTGTTGGCGGAGCGCCGGGCTGGCCGTGTGACACTCATCTGTACACAGTCTGTGGAGGAGGCTGACGCTTGTGCTG
Seq A exon
ATCGAAAAGCTTTCCTTTCAAATGGGAGAGTACAGTGTGTTGGCTCATCTCTGTACTTGAAGAGAAAGTGGGGAATTGGCTATCACTTAAG
Seq C2 exon
GATATGCATAAATGATCAGTGTGACCCTGGGCTTGCATCATCCCTGGTCAGGCGGTACATCCCCAATGCTGTGATCAAAGGGCAGGATGGGGATGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000021393-'2-4,'2-2,3-4=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0000522=ABC_tran=PD(9.2=17.0)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AATGGTGGGGCTGGATCCTT
R:
CCTGACCAGGGATGATGCAAG
Band lengths:
171-262
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]