MmuEX6090845 @ mm10
Exon Skipping
Gene
ENSMUSG00000041797 | Abca9
Description
ATP-binding cassette, sub-family A (ABC1), member 9 [Source:MGI Symbol;Acc:MGI:2386796]
Coordinates
chr11:110141509-110144881:-
Coord C1 exon
chr11:110144743-110144881
Coord A exon
chr11:110144199-110144289
Coord C2 exon
chr11:110141509-110141648
Length
91 bp
Sequences
Splice sites
3' ss Seq
TTTTGGTTCTTCTCAACTAGACA
3' ss Score
6.27
5' ss Seq
AAGGTACAG
5' ss Score
8.04
Exon sequences
Seq C1 exon
GTTTTGCTCCTGGATGAACCAACTGCTGGGTTGGATCCACTCTCGAGGCATCGCATATGGAACCTACTGAAAGAGAGGAGAGCAGGCAGAGTAATTGTCTTCAGTACTCAGTTCATGGATGAGGCTGATATCCTGGCCG
Seq A exon
ACAGGAAGGTGTTTATATCCAATGGGAGACTGAAGTGTGCGGGCTCTTCTCTGTTCCTGAAGAAGAAATGGGGCATTGGCTATCATCTAAG
Seq C2 exon
TTTGCATTTGAATGAAGCGTGTGATCCAGAGGGTATAACGTCACTGGTCAAAAAGCACATCTCCGACGCCAGGCTGACCACGCAAAGCGAAGAACGGCTTGTCTATATCTTGCCCCTGGAAAGGACAAACAAGTTTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000041797-'19-19,'19-16,20-19=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0000522=ABC_tran=PD(5.4=17.0)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGAGAGGAGAGCAGGCAGAG
R:
AGACAAGCCGTTCTTCGCTTT
Band lengths:
173-264
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types