RnoEX6050305 @ rn6
Exon Skipping
Gene
ENSRNOG00000059326 | Abca9
Description
ATP binding cassette subfamily A member 9 [Source:RGD Symbol;Acc:1305931]
Coordinates
chr10:98450126-98452979:-
Coord C1 exon
chr10:98452841-98452979
Coord A exon
chr10:98452277-98452367
Coord C2 exon
chr10:98450126-98450265
Length
91 bp
Sequences
Splice sites
3' ss Seq
GTTTGGTTCTTCCCAAATAGACA
3' ss Score
6.32
5' ss Seq
AAGGTACAG
5' ss Score
8.04
Exon sequences
Seq C1 exon
GTCTTGCTACTGGATGAACCAACCGCTGGGTTGGACCCGCTCTCAAGGCATCACATTTGGAACCTACTGAAAGAGCGGAGATCAGGCAGAGTAATTGTCTTTAGTACTCAGTTCATGGATGAAGCTGATATCCTGGCTG
Seq A exon
ACAGGAAGGTGTTTATATCCAACGGGAGACTGAGGTGTGCAGGCTCTTCTCTGTTTCTGAAGAAGAAATGGGGCATCGGCTATCACCTAAG
Seq C2 exon
TTTGCATTTGAATGAAACTTGTGATCCAGAGAGTATAACATCACTGGTCAAAAAGCACATACCGGACGCCAGACTGACTGCACAAAGCGACGAACAGCTTGTCTATATCTTGCCCCTGGAAAGGACAAACAAGTTTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000059326-'16-18,'16-17,17-18=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0000522=ABC_tran=PD(5.4=17.0)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGCGGAGATCAGGCAGAGTA
R:
CAAGCTGTTCGTCGCTTTGTG
Band lengths:
168-259
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]