RnoEX6050330 @ rn6
Exon Skipping
Gene
ENSRNOG00000046890 | Abca6
Description
ATP binding cassette subfamily A member 6 [Source:RGD Symbol;Acc:1308998]
Coordinates
chr10:98517622-98519481:-
Coord C1 exon
chr10:98519343-98519481
Coord A exon
chr10:98518741-98518831
Coord C2 exon
chr10:98517622-98517761
Length
91 bp
Sequences
Splice sites
3' ss Seq
GATGTGCTTTGTTTCCTCAGACA
3' ss Score
8.97
5' ss Seq
AAGGTAAAG
5' ss Score
9.06
Exon sequences
Seq C1 exon
ATTTTGCTCTTAGATGAACCTACTGCGGGACTCGATCCCTTCTCAAGGCAGCGAGTGTGGGGTTTCCTGAAGGAACGCAGGGCGGACCGCGTGATCCTCTTCAGTACGCAGTTCACCGACGAGGCAGACATCCTTGCTG
Seq A exon
ACAGGAAAGTGATCCTCTCCAACGGGGCTCTCAAGTGTACAGGGTCTTCCGTCTTCCTGAAGAGAAAGTGGGGTCTTGGATATCACTTAAG
Seq C2 exon
TTTGTTCATGAATGAAACGTGCGATTCAGAGCAGTTAACATCCTTCATCAATCACCACATCCCCGGTGCTAAACTAAAAGCAAAAACCAAAGAAAAGCTTGTGTACACTTTGCCACTGGAAAAGACAAGCAAGTTCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000046890-'19-21,'19-20,20-21=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0000522=ABC_tran=PD(5.4=17.0)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCGTGATCCTCTTCAGTACGC
R:
TGCTTGTCTTTTCCAGTGGCA
Band lengths:
182-273
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]