MmuEX6090878 @ mm10
Exon Skipping
Gene
ENSMUSG00000044749 | Abca6
Description
ATP-binding cassette, sub-family A (ABC1), member 6 [Source:MGI Symbol;Acc:MGI:1923434]
Coordinates
chr11:110216516-110219001:-
Coord C1 exon
chr11:110218863-110219001
Coord A exon
chr11:110218211-110218301
Coord C2 exon
chr11:110216516-110216655
Length
91 bp
Sequences
Splice sites
3' ss Seq
TGTTTGCTTTGTTTTCTCAGATA
3' ss Score
9.48
5' ss Seq
AAGGTAAAG
5' ss Score
9.06
Exon sequences
Seq C1 exon
ATTTTGCTCTTAGATGAACCTACTGTAGGACTCGATCCCTTTTCGAGGCAGCGAATATGGGGTTTCCTGAAGGAACGCAGGGCAGACCACGTGATCCTCTTCAGTACTCAGTTCATGGACGAGGCTGACATCCTTGCTG
Seq A exon
ATAGGAAAGTGCTCATCGCCAACGGAGCTCTCAAGTGCACAGGGTCTTCCGTCTTTCTGAAGAGAAAATGGGGTCTTGGATATCACTTAAG
Seq C2 exon
TTTGTTTATGGATGAAACGTGTGATTCAGAGCGGCTAACATCCTTCATCAACCATCACATCCCATATGCTAAATTAAAGGCCAAAACCAAAGAAAAGCTTGTGTACATTTTGCCACTGGAAAGGACAAGCGAATTCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000044749-'18-21,'18-19,19-21=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0000522=ABC_tran=PD(5.4=17.0)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTCAGTTCATGGACGAGGCT
R:
TTCGCTTGTCCTTTCCAGTGG
Band lengths:
167-258
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types