RnoEX0006359 @ rn6
Exon Skipping
Gene
ENSRNOG00000019745 | Actn3
Description
actinin alpha 3 [Source:RGD Symbol;Acc:621792]
Coordinates
chr1:220127695-220128971:-
Coord C1 exon
chr1:220128886-220128971
Coord A exon
chr1:220128485-220128577
Coord C2 exon
chr1:220127695-220127925
Length
93 bp
Sequences
Splice sites
3' ss Seq
CCTTGCTGTCTCCACTACAGGCA
3' ss Score
9.25
5' ss Seq
GAGGTGAGG
5' ss Score
8.41
Exon sequences
Seq C1 exon
ATATTGTGAACACCCCCAAACCAGATGAGAAAGCCATCATGACCTATGTTTCCTGCTTCTACCATGCATTTGCTGGGGCTGAGCAG
Seq A exon
GCAGAGACTGCTGCCAACAGGATCTGCAAGGTCTTAGCTGTGAACCAGGAAAACGAGAAGCTGATGGAGGAGTATGAGAAACTGGCTAGTGAG
Seq C2 exon
CTGTTGGAGTGGATCCGCCGCACTGTCCCATGGCTAGAGAACCGAGTGGGTGAACCCAGCATGAGTGCCATGCAGCGCAAGCTGGAGGACTTCCGCGACTACAGGCGCCTGCACAAGCCTCCCCGTGTGCAGGAGAAGTGCCAGCTGGAGATCAACTTCAACACGCTGCAGACCAAGCTGCGCCTGAGCCACCGACCTGCTTTCATGCCCTCAGAGGGCAAGCTGGTTTCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000019745-'13-15,'13-14,14-15
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (disopred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
PF0030726=CH=PD(23.1=82.8)
A:
PF0043516=Spectrin=PU(9.9=35.5)
C2:
PF0043516=Spectrin=FE(68.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTACCATGCATTTGCTGGGG
R:
TGATCTCCAGCTGGCACTTCT
Band lengths:
183-276
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]