BtaEX6103726 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000022244 | ACTN3
Description
actinin, alpha 3 (gene/pseudogene) [Source:HGNC Symbol;Acc:HGNC:165]
Coordinates
chr29:45236680-45237826:+
Coord C1 exon
chr29:45236680-45236765
Coord A exon
chr29:45237068-45237160
Coord C2 exon
chr29:45237596-45237826
Length
93 bp
Sequences
Splice sites
3' ss Seq
TCTGCCCATTCCCACCAAAGGCA
3' ss Score
5.93
5' ss Seq
GAGGTAAGA
5' ss Score
10.06
Exon sequences
Seq C1 exon
ACATTGTGAACACCCCAAAGCCTGATGAGAAGGCCATCATGACCTATGTCTCCTGCTTCTACCACGCCTTTGCCGGGGCGGAGCAG
Seq A exon
GCAGAGACAGCTGCCAACAGGATCTGCAAAGTGCTGGCCGTGAACCAGGAGAACGAGAAGCTGATGGAGGAATATGAAAAGCTGGCCAGTGAG
Seq C2 exon
CTACTGGAATGGATCCGCCGGACCGTGCCGTGGCTGGAGAACCGCGTGGGCGAGCCCAGCATGAGCGCCATGCAACGCAAGCTGGAAGACTTCCGGGACTACCGGCGCCTGCACAAGCCGCCCCGCGTGCAGGAGAAGTGCCAGCTGGAGATTAACTTCAACACACTGCAGACCAAGCTGCGGCTGAGCCACCGGCCGGCCTTCATGCCATCTGAGGGCAAGCTGGTCTCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000022244-'11-12,'11-10,12-12=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (disopred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0030726=CH=PD(23.1=82.8)
A:
PF0043516=Spectrin=PU(9.9=35.5)
C2:
PF0043516=Spectrin=FE(68.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GTGAACACCCCAAAGCCTGAT
R:
GAAGTCTTCCAGCTTGCGTTG
Band lengths:
174-267
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]