GgaEX6038226 @ galGal4
Exon Skipping
Gene
ENSGALG00000009474 | ACTN1
Description
alpha-actinin-1 [Source:RefSeq peptide;Acc:NP_989458]
Coordinates
chr5:27548717-27557065:+
Coord C1 exon
chr5:27548717-27548802
Coord A exon
chr5:27555644-27555736
Coord C2 exon
chr5:27556835-27557065
Length
93 bp
Sequences
Splice sites
3' ss Seq
GTTTTTCTTTTCTTTGGCAGGCG
3' ss Score
9.28
5' ss Seq
GATGTAGGT
5' ss Score
4.9
Exon sequences
Seq C1 exon
ACATTGTTGGAACTGCCCGTCCTGACGAGAAAGCCATCATGACCTATGTTTCTAGCTTCTACCACGCCTTCTCAGGAGCCCAGAAG
Seq A exon
GCGGAGACAGCAGCAAATCGTATTTGCAAGGTTCTGGCAGTCAACCAAGAGAATGAACAGCTCATGGAAGACTATGAAAAACTGGCCAGTGAT
Seq C2 exon
CTGCTGGAGTGGATCCGTCGCACCATCCCCTGGCTGGAGAACCGGGCACCAGAGAACACCATGCAAGCCATGCAGCAGAAACTGGAGGACTTCCGGGACTACCGCCGCCTGCATAAGCCCCCCAAAGTCCAAGAGAAGTGCCAACTTGAGATCAATTTCAACACCTTGCAGACCAAGCTACGGCTCAGCAACAGGCCGGCCTTCATGCCTTCAGAAGGGAAAATGGTTTCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009474-'33-23,'33-22,40-23=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (disopred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0030726=CH=PD(23.1=82.8)
A:
PF0043516=Spectrin=PU(9.9=35.5)
C2:
PF0043516=Spectrin=FE(68.5=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
ACATTGTTGGAACTGCCCGTC
R:
CGGAAGTCCTCCAGTTTCTGC
Band lengths:
181-274
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]