RnoEX0006329 @ rn6
Exon Skipping
Gene
ENSRNOG00000056756 | Actn1
Description
actinin, alpha 1 [Source:RGD Symbol;Acc:70907]
Coordinates
chr6:103391950-103401126:-
Coord C1 exon
chr6:103401041-103401126
Coord A exon
chr6:103393462-103393554
Coord C2 exon
chr6:103391950-103392180
Length
93 bp
Sequences
Splice sites
3' ss Seq
TTTCTCTGTTTCATCACCAGGCG
3' ss Score
10.81
5' ss Seq
GATGTGGGT
5' ss Score
2.02
Exon sequences
Seq C1 exon
ACATCGTCGGAACTGCCCGGCCAGATGAGAAAGCCATTATGACCTATGTGTCTAGCTTCTACCATGCCTTCTCTGGAGCCCAGAAG
Seq A exon
GCGGAAACAGCAGCCAATCGAATCTGTAAAGTGTTGGCCGTCAATCAAGAGAATGAACAGCTTATGGAAGACTATGAGAAGCTGGCCAGTGAT
Seq C2 exon
CTGTTAGAGTGGATCCGCCGCACCATCCCATGGCTGGAGAATCGGGTGCCCGAGAACACCATGCAGGCCATGCAGCAGAAGCTGGAGGACTTCCGAGACTACCGACGCCTGCACAAGCCGCCCAAGGTGCAGGAGAAGTGCCAGCTGGAGATCAACTTCAACACACTGCAGACCAAGCTGCGGCTAAGCAACCGGCCTGCCTTCATGCCCTCCGAGGGCAGGATGGTCTCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000056756-'20-13,'20-12,23-13
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (disopred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
PF0030726=CH=PD(23.1=82.8)
A:
PF0043516=Spectrin=PU(9.9=35.5)
C2:
PF0043516=Spectrin=FE(68.5=100)
Main Skipping Isoform:
ENSRNOT00000091560fB544
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
CGGCCAGATGAGAAAGCCATT
R:
TCTCGGAAGTCCTCCAGCTTC
Band lengths:
167-260
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]