BtaEX6054751 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000018255 | ACTN1
Description
Bos taurus actinin, alpha 1 (ACTN1), mRNA. [Source:RefSeq mRNA;Acc:NM_001035351]
Coordinates
chr10:81038469-81046958:-
Coord C1 exon
chr10:81046873-81046958
Coord A exon
chr10:81039948-81040040
Coord C2 exon
chr10:81038469-81038699
Length
93 bp
Sequences
Splice sites
3' ss Seq
CACCCTCTCTGTCTTGTCAGGCC
3' ss Score
9.67
5' ss Seq
GACGTGGGT
5' ss Score
3.53
Exon sequences
Seq C1 exon
ACATCGTCGGAACCGCCCGCCCGGACGAGAAAGCCATCATGACTTACGTGTCCAGCTTCTACCACGCCTTCTCTGGAGCCCAGAAG
Seq A exon
GCCGAGACAGCAGCCAATCGCATCTGCAAGGTGCTGGCCGTCAACCAGGAGAACGAGCAGCTCATGGAGGACTACGAGAAGCTGGCCAGCGAC
Seq C2 exon
CTGCTGGAGTGGATCCGCCGCACCATCCCATGGCTGGAGAACCGGGCACCCGAGAACACCATGCACGCCATGCAGCAGAAGCTGGAGGACTTCCGGGACTACCGGCGCCTTCACAAGCCGCCCAAGGTGCAGGAGAAGTGCCAGCTGGAGATCAACTTCAACACGCTGCAGACCAAGCTGCGCCTCAGCAACCGGCCCGCCTTCATGCCCTCCGAGGGCAGGATGGTCTCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000018255-'23-12,'23-11,25-12=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (disopred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0030726=CH=PD(23.1=82.8)
A:
PF0043516=Spectrin=PU(9.9=35.5)
C2:
PF0043516=Spectrin=FE(68.5=100)
Main Skipping Isoform:
ENSBTAT00000024301fB363
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
TCTACCACGCCTTCTCTGGAG
R:
TGATCTCCAGCTGGCACTTCT
Band lengths:
183-276
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]