MmuEX6081846 @ mm9
Exon Skipping
Gene
ENSMUSG00000015143 | Actn1
Description
actinin, alpha 1 [Source:MGI Symbol;Acc:MGI:2137706]
Coordinates
chr12:81284380-81293440:-
Coord C1 exon
chr12:81293355-81293440
Coord A exon
chr12:81285794-81285886
Coord C2 exon
chr12:81284380-81284610
Length
93 bp
Sequences
Splice sites
3' ss Seq
TTTCTCTATCTCGTTTCCAGGCA
3' ss Score
10.98
5' ss Seq
GATGTGGGT
5' ss Score
2.02
Exon sequences
Seq C1 exon
ACATCGTCGGAACTGCCCGGCCAGATGAGAAAGCCATTATGACTTATGTGTCTAGCTTCTATCATGCCTTCTCTGGAGCCCAGAAG
Seq A exon
GCAGAAACAGCAGCCAATCGCATCTGCAAAGTGTTGGCGGTCAATCAAGAGAACGAGCAGCTTATGGAAGACTATGAGAAGCTGGCCAGTGAT
Seq C2 exon
CTGTTGGAGTGGATCCGCCGCACCATCCCATGGCTGGAGAATCGGGTGCCTGAGAACACCATGCATGCCATGCAGCAGAAGCTGGAGGACTTCCGAGACTATAGACGCCTGCACAAGCCGCCCAAGGTGCAGGAGAAGTGCCAGCTGGAGATCAACTTTAACACGCTGCAGACCAAGCTGCGGCTCAGCAACCGGCCTGCCTTCATGCCCTCCGAGGGCAGGATGGTCTCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000015143-'16-11,'16-9,18-11=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (disopred):
C1=0.155 A=0.242 C2=0.000
Domain overlap (PFAM):
C1:
PF0030726=CH=PD(23.1=82.8)
A:
PF0043516=Spectrin=PU(9.9=35.5)
C2:
PF0043516=Spectrin=FE(68.5=100)
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
CGGCCAGATGAGAAAGCCATT
R:
GCAGGCGTCTATAGTCTCGGA
Band lengths:
181-274
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: