DreEX0010926 @ danRer10
Exon Skipping
Gene
ENSDARG00000007219 | actn1
Description
actinin, alpha 1 [Source:ZFIN;Acc:ZDB-GENE-081113-4]
Coordinates
chr13:36212409-36221166:-
Coord C1 exon
chr13:36221081-36221166
Coord A exon
chr13:36213885-36213977
Coord C2 exon
chr13:36212409-36212639
Length
93 bp
Sequences
Splice sites
3' ss Seq
GTGTGCTTTACTCCCTTCAGGCC
3' ss Score
9.45
5' ss Seq
GATGTGAGC
5' ss Score
4.72
Exon sequences
Seq C1 exon
ATATTGTTGGTACGGCCCGTCCCGATGAGAAGGCCATCATGACCTACGTTTCTAGCTTCTACCATGCCTTCTCCGGGGCGCAGAAG
Seq A exon
GCCGAAACGGCAGCCAATCGGATCTGCAAAGTGCTGGCTGTCAATCAGGAGAACGAGCAGCTGATGGAGGACTATGAGAAACTAGCCAGTGAT
Seq C2 exon
CTCCTGGAGTGGATTCGCAGAACCATCCCGTGGTTGGAGAACCGCGTCCCAGAGAACACCATGCAGGCCATGCAGCAGAAGCTGGAGGATTTCCGGGACTACAGACGACTTCACAAACCACCCAAAGTTCAGGAAAAATGCCAGCTGGAGATCAACTTCAACACACTGCAGACCAAACTGCGTCTCAGCAACCGGCCAGCGTTCATGCCTTCGGAGGGAAAGATGGTCTCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000007219-'10-11,'10-10,12-11
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (disopred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0030726=CH=PD(23.1=82.8)
A:
PF0043516=Spectrin=PU(9.9=35.5)
C2:
PF0043516=Spectrin=FE(68.5=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
TCCCGATGAGAAGGCCATCAT
R:
GAAGTCGTCTGTAGTCCCGGA
Band lengths:
179-272
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]