GgaEX1006134 @ galGal4
Exon Skipping
Gene
ENSGALG00000014463 | ACTN2
Description
Alpha-actinin-2 [Source:UniProtKB/Swiss-Prot;Acc:P20111]
Coordinates
chr3:36970978-36973950:-
Coord C1 exon
chr3:36973122-36973950
Coord A exon
chr3:36972339-36972431
Coord C2 exon
chr3:36970978-36971208
Length
93 bp
Sequences
Splice sites
3' ss Seq
TTATTTGCTATATTTTATAGGCT
3' ss Score
8.75
5' ss Seq
GAGGTAAAG
5' ss Score
8.27
Exon sequences
Seq C1 exon
TTATTTTAATAGATATTTGTGATTCTAATGTTGAGAGTCTTTGGTGATTGTAAAGACCATTTCAGAAAAACTGTATTTGAAGATACTGTGAAACGGAATTTTTTGTTGCTACATCAACATCTTATGCTTTTGCTGCATAAAATCATGTTTGACTTCTGGAGACTGAGAGTATTCTGGACTTATTCATTCTGAGTAGTAATTTAGGGCTGCCTAGAGATGTGGAGAGGCAAAGAAGTTTCCCACAGCAGTATTTGCACCTGGCTGCTACTGAAGCCAGTGGAATTATTTGTAGACCAAAGTGTTGGTATAAGAAGCAAGAGTATCAGCAGATCTATCATACAGGATGGTATTATAACAAATGTTGCATTTTCATCTGCTGTATTTCTTACATTTCTAGTCTACAAATGGACACAAACCAACTTATGTGGAGAGAAAAAAAATGCCTTAAAGTAGTTGATATTTTTCCATCTTCCTCTGAATTGAATTTCCCTTCCTATCTG
Seq A exon
GCTGAGACTGCAGCAAACCGGATCTGTAAGGTGCTTGCTGTGAATCAAGAAAATGAGAGGTTGATGGAAGAGTATGAGAGACTTGCAAGTGAG
Seq C2 exon
CTTTTAGAATGGATTCGCAGGACAATTCCTTGGCTGGAAAACAGGACCCCGGAAAAAACAATGCAGGCCATGCAGAAGAAATTAGAGGATTTCCGGGACTACCGCCGCAAACACAAACCTCCCAAAGTTCAAGAGAAATGTCAGCTGGAGATCAATTTCAACACCCTGCAGACAAAACTGAGAATCAGCAATCGACCAGCTTTCATGCCATCGGAGGGAAAAATGGTTTCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000014463-'20-15,'20-14,21-15
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (disopred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0030726=CH=PD(23.1=82.8)
A:
PF0043516=Spectrin=PU(9.9=35.5)
C2:
PF0043516=Spectrin=FE(68.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
TGGACACAAACCAACTTATGTGGA
R:
CCTCTAATTTCTTCTGCATGGCCT
Band lengths:
183-276
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]