BtaEX6104901 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000009696 | ACTN2
Description
Bos taurus actinin, alpha 2 (ACTN2), mRNA. [Source:RefSeq mRNA;Acc:NM_001034635]
Coordinates
chr28:9421852-9425707:+
Coord C1 exon
chr28:9421852-9421937
Coord A exon
chr28:9423555-9423647
Coord C2 exon
chr28:9425477-9425707
Length
93 bp
Sequences
Splice sites
3' ss Seq
TTACCTATTGTGTTTTACAGGCT
3' ss Score
10.24
5' ss Seq
GAGGTAAAG
5' ss Score
8.27
Exon sequences
Seq C1 exon
ACATTGTGAACACTCCCAAGCCCGATGAAAGAGCTATCATGACATACGTTTCCTGCTTCTACCATGCTTTCGCGGGCGCGGAGCAG
Seq A exon
GCTGAGACAGCGGCTAACAGGATATGTAAGGTTCTTGCTGTGAATCAAGAGAATGAGAGGCTGATGGAAGAATATGAGAGGCTAGCGAGTGAG
Seq C2 exon
CTTTTGGAATGGATTCGGCGCACGATCCCCTGGCTCGAGAACCGGACTCCTGAGAAGACCATGCAGGCCATGCAGAAGAAGCTGGAGGACTTCCGGGATTATCGCCGGAAGCACAAGCCTCCCAAGGTGCAGGAGAAGTGCCAGCTGGAGATCAACTTCAACACCCTGCAGACCAAGCTGAGGATCAGCAACCGGCCGGCCTTCATGCCCTCCGAGGGCAAGATGGTGTCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000009696-'9-14,'9-10,11-14=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (disopred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0030726=CH=PD(23.1=82.8)
A:
PF0043516=Spectrin=PU(9.9=35.5)
C2:
PF0043516=Spectrin=FE(68.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
ATTGTGAACACTCCCAAGCCC
R:
CCTCCAGCTTCTTCTGCATGG
Band lengths:
172-265
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]