DreEX6053748 @ danRer10
Exon Skipping
Gene
ENSDARG00000071090 | actn2b
Description
actinin, alpha 2b [Source:ZFIN;Acc:ZDB-GENE-051127-39]
Coordinates
chr17:20112879-20113665:-
Coord C1 exon
chr17:20113580-20113665
Coord A exon
chr17:20113198-20113290
Coord C2 exon
chr17:20112879-20113109
Length
93 bp
Sequences
Splice sites
3' ss Seq
ACTGTATTTTTCCTGCTCAGGCT
3' ss Score
8.23
5' ss Seq
GAGGTGAGA
5' ss Score
7.66
Exon sequences
Seq C1 exon
ACATCCTGAGCACCCCTAAACCTGATGAGAGGGCTATTATGACATACGTGTCCTGCTTTTACCATGCATTTGCTGGAGCTGAGCAG
Seq A exon
GCTGAAACTGCTGCGAACAGGATCTGTAAGGTGCTTGGAGTGAATCAGGAAAATGAGAAGTTGATGGAGGATTATGAAAGGCTGGCTAGTGAG
Seq C2 exon
CTGTTGGAGTGGATCAGACGTACCATTCCTTGGCTGGAGAATCGTGCAGCTGAGAAGACCATGGTTGAGATGCAGAGGAAGCTGGAAGATTTTCGAGATTACCGCAGGATGCACAAACCACCCAAAGTGCAGGAGAAATGTCAGCTGGAAATCAGCTTCAACACGCTGCAGACCAAACTCCGCATCAGCAACCGGCCTGCGTTTATGCCCTCTGAGGGCAAAATGGTGTCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000071090-'11-11,'11-9,12-11=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (disopred):
C1=0.022 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0030726=CH=PD(23.1=82.8)
A:
PF0043516=Spectrin=PU(9.9=35.5)
C2:
PF0043516=Spectrin=FE(68.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
ATCCTGAGCACCCCTAAACCT
R:
TCCAGCTTCCTCTGCATCTCA
Band lengths:
170-263
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]