RnoEX0006356 @ rn6
Exon Skipping
Gene
ENSRNOG00000017833 | Actn2
Description
actinin alpha 2 [Source:RGD Symbol;Acc:1308097]
Coordinates
chr17:66325227-66330100:-
Coord C1 exon
chr17:66330015-66330100
Coord A exon
chr17:66327877-66327969
Coord C2 exon
chr17:66325227-66325457
Length
93 bp
Sequences
Splice sites
3' ss Seq
TTACCTATTGTGTTTTGCAGGCC
3' ss Score
10.89
5' ss Seq
GAGGTAAAG
5' ss Score
8.27
Exon sequences
Seq C1 exon
ACATTGTCAACACTCCCAAACCCGATGAAAGAGCCATCATGACTTACGTTTCCTGCTTCTACCATGCTTTCGCGGGAGCGGAGCAG
Seq A exon
GCCGAGACGGCAGCTAACAGGATATGTAAGGTTCTTGCTGTGAATCAAGAGAATGAGAGGCTGATGGAAGAATATGAGAGGCTAGCGAGTGAG
Seq C2 exon
CTCTTGGAATGGATTCGACGCACAATCCCCTGGCTGGAGAACAGGACACCGGAGAAGACCATGCAAGCCATGCAGAAGAAGCTGGAGGACTTCCGGGACTATCGTCGTAAGCACAAGCCCCCAAAGGTGCAGGAGAAGTGCCAGCTGGAGATCAACTTCAACACCCTGCAGACCAAGCTTCGGATCAGCAACCGGCCTGCCTTCATGCCCTCCGAGGGCAAGATGGTGTCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000017833_MULTIEX1-2/2=1-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (disopred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
PF0030726=CH=PD(23.1=82.8)
A:
PF0043516=Spectrin=PU(9.9=35.5)
C2:
PF0043516=Spectrin=FE(68.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
TTGTCAACACTCCCAAACCCG
R:
CCTCCAGCTTCTTCTGCATGG
Band lengths:
171-264
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]