RnoEX0018961 @ rn6
Exon Skipping
Gene
ENSRNOG00000002841 | Cdc42bpa
Description
CDC42 binding protein kinase alpha [Source:RGD Symbol;Acc:621406]
Coordinates
chr13:98323284-98344536:+
Coord C1 exon
chr13:98323284-98323432
Coord A exon
chr13:98340897-98340988
Coord C2 exon
chr13:98344336-98344536
Length
92 bp
Sequences
Splice sites
3' ss Seq
TAAATGTATTTTTTTCAGAGACA
3' ss Score
-4.3
5' ss Seq
ACGGTAAAT
5' ss Score
7.76
Exon sequences
Seq C1 exon
TACCTGGTTATGGATTATTATGTTGGTGGGGATTTACTTACTCTGCTCAGCAAATTTGAAGATCGATTGCCAGAAGAGATGGCTCGGTTTTACTTGGCTGAGATGGTGATAGCCATTGACTCAGTTCACCAGCTCCACTATGTTCACAG
Seq A exon
ACATCAAACCTGACAATATATTGATGGATATGAATGGACATATTCGTTTAGCAGATTTTGGTTCTTGTCTGAAGCTGATGGAAGATGGAACG
Seq C2 exon
GTCCAGTCCTCAGTGGCAGTTGGAACTCCAGACTACATTTCCCCGGAAATCCTTCAGGCTATGGAGGACGGGAAAGGCAGATATGGACCAGAGTGTGACTGGTGGTCCTTGGGAGTCTGCATGTATGAGATGCTTTACGGAGAAACACCATTCTATGCGGAATCTCTGGTGGAGACATATGGAAAAATTATGAATCATAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000002841-'12-11,'12-10,13-11
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006920=Pkinase=FE(18.4=100)
A:
PF0006920=Pkinase=FE(11.6=100)
C2:
PF0006920=Pkinase=FE(24.7=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGCTGAGATGGTGATAGCCA
R:
GACTCCCAAGGACCACCAGTC
Band lengths:
172-264
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]