GgaEX0013465 @ galGal3
Exon Skipping
Gene
ENSGALG00000009158 | CDC42BPA
Description
NA
Coordinates
chr3:13241133-13269639:+
Coord C1 exon
chr3:13241133-13241281
Coord A exon
chr3:13268583-13268676
Coord C2 exon
chr3:13269439-13269639
Length
94 bp
Sequences
Splice sites
3' ss Seq
TTTTGTTTGCTTGTTTGCAGGGA
3' ss Score
9.8
5' ss Seq
ACGGTAAAT
5' ss Score
7.76
Exon sequences
Seq C1 exon
TACCTGGTTATGGATTATTACGTTGGAGGAGACCTACTGACGTTGCTTAGCAAGTTTGAGGACAGATTACCTGAAGATATGGCTCGATTTTATTTGGCTGAAATGGTGATAGCCATCGATTCTGTGCATCAGTTGCATTATGTCCACAG
Seq A exon
GGATATTAAACCAGACAACATCTTGATGGATATGAATGGCCATATTCGATTAGCAGATTTTGGTTCTTGTCTGAAACTGATGGAAGATGGAACG
Seq C2 exon
GTTCAATCTTCAGTAGCTGTTGGGACGCCAGACTACATCTCTCCAGAAATTTTGCAGGCCATGGAAGATGGAAAAGGGAAGTATGGGCCTGAGTGTGACTGGTGGTCCCTAGGCGTTTGCATGTATGAAATGCTTTATGGAGAAACACCCTTTTATGCTGAGTCCTTGGTGGAGACCTATGGGAAAATAATGAACCACAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009158-'4-12,'4-11,7-12
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006920=Pkinase=FE(18.4=100)
A:
PF0006920=Pkinase=FE(11.6=100)
C2:
PF0006920=Pkinase=FE(24.7=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGAGGAGACCTACTGACGTT
R:
AGAGATGTAGTCTGGCGTCCC
Band lengths:
168-262
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]