MmuEX6029653 @ mm9
Exon Skipping
Gene
ENSMUSG00000026490 | Cdc42bpa
Description
CDC42 binding protein kinase alpha [Source:MGI Symbol;Acc:MGI:2441841]
Coordinates
chr1:181970183-181995297:+
Coord C1 exon
chr1:181970183-181970331
Coord A exon
chr1:181991921-181992014
Coord C2 exon
chr1:181995097-181995297
Length
94 bp
Sequences
Splice sites
3' ss Seq
AATGTATTTATTTTTTTCAGAGA
3' ss Score
8.06
5' ss Seq
ACGGTAAAT
5' ss Score
7.76
Exon sequences
Seq C1 exon
TACCTGGTTATGGATTATTATGTTGGTGGGGATTTACTTACTCTGCTCAGCAAATTTGAAGATAGATTGCCTGAAGAGATGGCTCGGTTTTACTTGGCTGAGATGGTGATAGCCATTGACTCAGTTCACCAGCTCCACTATGTTCACAG
Seq A exon
AGACATCAAACCTGACAATATATTGATGGATATGAATGGACATATTCGTTTAGCAGATTTTGGTTCTTGTCTGAAGCTGATGGAAGATGGAACG
Seq C2 exon
GTCCAGTCCTCGGTGGCAGTTGGAACTCCAGATTATATTTCTCCGGAAATCCTTCAGGCTATGGAAGACGGAAAAGGCAGATATGGACCAGAGTGTGACTGGTGGTCCTTGGGGGTCTGTATGTATGAGATGCTTTACGGAGAAACACCATTCTATGCAGAGTCTCTGGTGGAGACATATGGAAAAATTATGAATCACAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026490-'12-13,'12-12,14-13=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006920=Pkinase=FE(18.4=100)
A:
PF0006920=Pkinase=FE(11.6=100)
C2:
PF0006920=Pkinase=FE(24.7=100)
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGCTGAGATGGTGATAGCCA
R:
CATACAGACCCCCAAGGACCA
Band lengths:
178-272
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: