DreEX6052913 @ danRer10
Exon Skipping
Gene
ENSDARG00000104283 | cdc42bpaa
Description
CDC42 binding protein kinase alpha (DMPK-like) a [Source:ZFIN;Acc:ZDB-GENE-120727-12]
Coordinates
chr17:8219223-8261095:+
Coord C1 exon
chr17:8219223-8219371
Coord A exon
chr17:8251961-8252054
Coord C2 exon
chr17:8260895-8261095
Length
94 bp
Sequences
Splice sites
3' ss Seq
TTCTGTTTTCTCTCTGACAGAGA
3' ss Score
9.94
5' ss Seq
ACGGTTAGT
5' ss Score
7.37
Exon sequences
Seq C1 exon
TACCTGGTGATGGATTACTATGTGGGCGGTGACCTCTTGACTCTCCTCAGCAAGTTTGAGGATCGTTTACCAGAGGACATGGCCCGCTTCTACCTGGCGGAGATGGTTCTGGCCATCGATTCTGTGCATCAGCTCCATTACGTCCACAG
Seq A exon
AGACATTAAGCCAGATAACATCCTCATAGATGTGAACGGACATATTCGACTCGCAGATTTCGGCTCCTGTCTGAAACTCACGGAGGATGGAACG
Seq C2 exon
GTGCAGTCGTCTGTTGCTGTGGGCACGCCAGACTACATCTCTCCTGAGATCCTGCAGGCCATGGAGGATGGGAAAGGGAAATATGGCCCTGAATGTGACTGGTGGTCACTGGGTGTTTGCATGTATGAAATGCTCTATGGGGAAACTCCTTTCTATGCTGAGTCCCTGGTGGAAACCTATGGCAAGATTATGAACCACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000104283-'4-9,'4-7,5-9=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.007
Domain overlap (PFAM):
C1:
PF0006920=Pkinase=FE(31.6=100)
A:
PF0006920=Pkinase=FE(11.6=100)
C2:
PF0006920=Pkinase=FE(24.7=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCTGGCCATCGATTCTGTGC
R:
ACATGCAAACACCCAGTGACC
Band lengths:
167-261
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]