RnoEX0022758 @ rn6
Exon Skipping
Gene
ENSRNOG00000023148 | Col11a1
Description
collagen type XI alpha 1 chain [Source:RGD Symbol;Acc:2372]
Coordinates
chr2:216970398-216978821:+
Coord C1 exon
chr2:216970398-216970451
Coord A exon
chr2:216978531-216978546
Coord C2 exon
chr2:216978768-216978821
Length
16 bp
Sequences
Splice sites
3' ss Seq
TTATCAATTCATGCCTGCAGGCT
3' ss Score
8.09
5' ss Seq
ACTGTAAGT
5' ss Score
8.59
Exon sequences
Seq C1 exon
GGAAAACTTGGGGTTCCAGGATTGCCAGGATATCCAGGAAGACAAGGTCCAAAG
Seq A exon
GCTTTCAGATGTCACT
Seq C2 exon
GGATCCACTGGATTTCCTGGATTTCCAGGTGCCAACGGGGAGAAAGGTGCCCGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000023148-'35-38,'35-37,36-38
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=0.944 A=0.000 C2=0.541
Domain overlap (PFAM):
C1:
PF0139113=Collagen=FE(27.9=100)
A:
PF0139113=Collagen=PD(3.3=33.3)
C2:
NO
Main Inclusion Isoform:
ENSRNOT00000068413fB3362
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAAAACTTGGGGTTCCAGGA
R:
CACCTTTCTCCCCGTTGGC
Band lengths:
103-119
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]