RnoEX0023331 @ rn6
Exon Skipping
Gene
ENSRNOG00000014851 | Col4a4
Description
collagen type IV alpha 4 chain [Source:RGD Symbol;Acc:1305355]
Coordinates
chr9:88282521-88284779:-
Coord C1 exon
chr9:88284673-88284779
Coord A exon
chr9:88283931-88284114
Coord C2 exon
chr9:88282521-88282589
Length
184 bp
Sequences
Splice sites
3' ss Seq
CTGTGACCTAACATTCCCAGGGG
3' ss Score
5.16
5' ss Seq
AAGGTACTT
5' ss Score
8.4
Exon sequences
Seq C1 exon
GGCAAAAAGGAGAAAGAGGACTGGATGGGCCCCCAGGATTTCCAGGGCCACATGGACAAGATGGTCGGGATGGACGTGCTGGAGAAAGAGGGGATCCCGGGCCTCGA
Seq A exon
GGGGACCATAAGGATGCAGCCCCTGGTGAGAGAGGGCTTCCCGGACTGCCAGGCCCTCCAGGGAAAGCAGGACCCGAGGGGCCTCCAGGACTGGGATTTCCAGGCCCACCAGGAGAGAGAGGCCTACCAGGAGAGCCCGGGCGCCCAGGCATGAGAGGCTTCGATGGCATGAAGGGGCAAAAAG
Seq C2 exon
GTGACTCCATTCCATGTAATGTAACCTACCCGGGGAAACCAGGTCCGCCAGGTTTTGATGGACCTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000014851_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=FE(57.4=100)
A:
PF0139113=Collagen=PD(8.2=8.1),PF0139113=Collagen=PU(90.6=93.5),PF0139113=Collagen=PU(41.1=48.4)
C2:
PF0139113=Collagen=PD(7.8=20.8),PF0139113=Collagen=FE(31.5=100),PF0139113=Collagen=PU(25.0=70.8)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAAAAAGGAGAAAGAGGACTGGA
R:
GGAGGTCCATCAAAACCTGGC
Band lengths:
173-357
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]