RnoEX0025921 @ rn6
Exon Skipping
Gene
ENSRNOG00000042224 | Cyp2j10
Description
cytochrome P450, family 2, subfamily j, polypeptide 10 [Source:RGD Symbol;Acc:1563215]
Coordinates
chr5:115024415-115026751:-
Coord C1 exon
chr5:115026610-115026751
Coord A exon
chr5:115024678-115024865
Coord C2 exon
chr5:115024415-115024553
Length
188 bp
Sequences
Splice sites
3' ss Seq
CCATCCCCATTTCCTTGAAGAAA
3' ss Score
4.97
5' ss Seq
AAAGTAAGT
5' ss Score
9.72
Exon sequences
Seq C1 exon
TACCCAGACAAGACGACTACAAGTTTCAATGAAGAAAACCTCATCTGCAGCACCCTGGACCTCTTCCTTGCTGGGACAGAGACAACATCCACGACACTGCGCTGGGCTGTGCTCTACATGGCCCTCTACCCAGAAGTCCAAG
Seq A exon
AAAAAGTACAGGCTGAAATTGACCAAGTGATTGGCCAGGAGAAGCATCCCAGCCTGGCTGACAGAGACTCTATGCCCTACACCAATGCTGTTGTCCATGAAATTCAGAGAATGGGCAATATTGTCCCTCTGAATGTTCCCAGAGAAGTGGCTGTTGATACTACACTGGCTGGATTCCATCTGCCGAAA
Seq C2 exon
GGATCTGTGGTTATGACCAACTTGACTGCATTGCATATGGACCCAAAAGAGTGGGCCACCCCAGATGTGTTCAACCCAGAGCACTTTTTGGAGAATGGACAGTTTAAGAAGAGAGACTCTTTCCTGCCATTCTCAATGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000042224_MULTIEX1-17/18=16-18
Average complexity
S
Mappability confidence:
97%=89=100%
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAAACCTCATCTGCAGCACCC
R:
TGAGAATGGCAGGAAAGAGTCT
Band lengths:
243-431
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]