MmuEX6094421 @ mm10
Exon Skipping
Gene
ENSMUSG00000028571 | Cyp2j13
Description
cytochrome P450, family 2, subfamily j, polypeptide 13 [Source:MGI Symbol;Acc:MGI:2385197]
Coordinates
chr4:96042660-96059125:-
Coord C1 exon
chr4:96058984-96059125
Coord A exon
chr4:96056773-96056960
Coord C2 exon
chr4:96042660-96045628
Length
188 bp
Sequences
Splice sites
3' ss Seq
AGACTCCCATTTCCTTGAAGAAA
3' ss Score
4.09
5' ss Seq
AAGGTAAGG
5' ss Score
10.51
Exon sequences
Seq C1 exon
TACCCAGGCAAGACTACTACAAGTTTCAATGAAGAAAACCTTATCTGCAGCACTCTGGACCTCTTCCTTGCTGGAACAGAGACAACATCCTCAACACTACGATGGGCTCTGCTCTACATGGCCCTATACCCAGAAGTCCAAG
Seq A exon
AAAATGTACAGGCTGAAATTGACCGAGTGATTGGCCAGTCGAAGCATCCCAGCCTGGCTGACAGAGACTCCATGCCCTACACCAATGCTGTTGTCCATGAAATTCTGAGAATGGGCAATAGTGTCCCTCTGAATATTCCCAGGGAAGTGGCAGTTGACACTACACTGGCTGGATTTCACTTGCCAAAG
Seq C2 exon
GAAAGCGAGCTTGCCTCGGAGAACAATTGGCCAGGTCTGAGCTCTTTATTTTCTTCACTGCCCTTGTGCAAAAATTTACCTTCAAGCCACCAGCCAATGAGAACCTGAGTCTGAAGTTCAGATTAGGCATCACCATTTCCCCAGTCAGCTACCGCATCGGTGCTGTCCCTAGACAATGATGCTGGAGAAGAAAAGGAGAGCAGAAAGAAGTGAAGAATGCACTGAGTCACTGAGCCACTGCCCATATATGGAGGGCAAGAAGGAAGGTGACGGGGAAAGTTGGAAGGAATTAGACTAAGGTCAGTGGACCTATATTCTGGACTGCTGAGACCTCCAAATTGGTTGTGGATAAATCACTTACATGCTCAATGATAAATCTTTTCATCTACAACTGCAAAGAGAACTGTGGTTCCTCCTTGTAAAAAGTGCTTGTAAGCAGGAAATGATGGTATACCAACCGCATAGAAATCACTGTTATATCATAGAATTATACCTTCAGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000028571-'7-12,'7-7,8-12
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.067 C2=0.065
Domain overlap (PFAM):
C1:
PF0006717=p450=PD(0.5=2.1),PF0006717=p450=FE(36.7=100)
A:
PF0006717=p450=FE(13.6=100)
C2:
PF0006717=p450=PD(11.8=90.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGCACTCTGGACCTCTTCCT
R:
CGGTAGCTGACTGGGGAAATG
Band lengths:
249-437
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types