RnoEX0027950 @ rn6
Exon Skipping
Gene
ENSRNOG00000056106 | Dip2b
Description
disco-interacting protein 2 homolog B [Source:RGD Symbol;Acc:1305671]
Coordinates
chr7:141856791-141860820:+
Coord C1 exon
chr7:141856791-141856914
Coord A exon
chr7:141858749-141858852
Coord C2 exon
chr7:141860709-141860820
Length
104 bp
Sequences
Splice sites
3' ss Seq
CAGTGTCCTCTGTCTCACAGGTA
3' ss Score
9.65
5' ss Seq
ACAGTACGC
5' ss Score
4.43
Exon sequences
Seq C1 exon
GGAACTACTGTGTGCACAGCCAGCTGCCTTCAGCTTCATAAGCGAGCAGAGAGGATCGCTTCAGTACTTGGTGACAAGGGACATCTGAATGCAGGGGACAATGTGGTTTTGCTCTACCCACCTG
Seq A exon
GTATCGAGTTGATTGCTGCATTCTATGGCTGCCTGTATGCAGGGTGTATACCTGTGACCGTGCGGCCCCCTCATGCGCAGAACCTTACTGCCACCTTGCCCACA
Seq C2 exon
GTCAGCAAAGCAGCGTGTGTCCTCACCACTCAGACTCTAATGAGGTTGCTCAAGTCTCGAGAGGCAGCAGCAGCAGTGGATGTGAAAACCTGGCCAGCCATCATTGACACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000056106-'42-42,'42-41,43-42
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0050123=AMP-binding=FE(8.6=100)
A:
PF0050123=AMP-binding=FE(8.4=100)
C2:
PF0050123=AMP-binding=FE(7.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTTCATAAGCGAGCAGAGAGG
R:
CTGTGTCAATGATGGCTGGCC
Band lengths:
204-308
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]