BtaEX6020714 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000005246 | DIP2B
Description
DIP2 disco-interacting protein 2 homolog B (Drosophila) [Source:HGNC Symbol;Acc:HGNC:29284]
Coordinates
chr5:29367986-29370979:-
Coord C1 exon
chr5:29370856-29370979
Coord A exon
chr5:29369340-29369461
Coord C2 exon
chr5:29367986-29368097
Length
122 bp
Sequences
Splice sites
3' ss Seq
TAATTGGCTGTGTCTTGCAGGCA
3' ss Score
7.62
5' ss Seq
GACGTAAGT
5' ss Score
10.93
Exon sequences
Seq C1 exon
GGCACTACAGTGTGCACAGCCAGCTGCCTTCAGCTTCATAAGCGAGCAGAGCGGATTGCGGCCGTCCTTGGTGACAAGGGGCATCTAAACGCGGGAGAGAACGTGGTGCTGCTCTATCCACCTG
Seq A exon
GCATAGAGTTAATCGCTGCATTCTACGGCTGTCTGTACGCGGGGTGCATACCTGTGACTGTCAGACCCCCTCATGCTCAGAACCTCACAGCCACGTTGCCCACTGTCCGCATGATTGTTGAC
Seq C2 exon
GTCAGCAAAGCAGCCTGCATTCTTACCACACAGACCCTAATGAGGTTACTGAGGTCCCGAGAGGCAGCAGCAGCCGTGGACGTGAAAACCTGGCCAACTATCATTGACACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000005246-'31-35,'31-33,32-35=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0050123=AMP-binding=FE(8.6=100)
A:
PF0050123=AMP-binding=FE(8.4=100)
C2:
PF0050123=AMP-binding=FE(7.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACTACAGTGTGCACAGCCAG
R:
CTGTGTCAATGATAGTTGGCCA
Band lengths:
234-356
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]