MmuEX0014706 @ mm10
Exon Skipping
Gene
ENSMUSG00000023026 | Dip2b
Description
disco interacting protein 2 homolog B [Source:MGI Symbol;Acc:MGI:2145977]
Coordinates
chr15:100190987-100195902:+
Coord C1 exon
chr15:100190987-100191110
Coord A exon
chr15:100193840-100193961
Coord C2 exon
chr15:100195791-100195902
Length
122 bp
Sequences
Splice sites
3' ss Seq
CAATGTCCTCTGTCTCATAGGCA
3' ss Score
8.08
5' ss Seq
GATGTAAGT
5' ss Score
9.11
Exon sequences
Seq C1 exon
GGAACTACTGTGTGCACAGCCAGCTGCCTTCAGCTTCATAAGCGAGCAGAGAGGATCGCTTCAGTACTTGGTGACAAGGGACATCTGAATGCAGGGGACAATGTAGTATTGCTCTACCCGCCTG
Seq A exon
GCATCGAGTTGATTGCTGCATTCTACGGCTGCCTGTATGCAGGATGTATACCTGTGACCGTGCGGCCCCCTCATGCGCAGAACCTCACTGCTACCTTGCCCACAGTACGCATGGTCGTTGAT
Seq C2 exon
GTCAGCAAGGCAGCGTGTGTCCTTACCACTCAAACTCTGATGAGGTTGCTCAAGTCTCGAGAGGCAGCGGCAGCTGTGGATGTGAAAACCTGGCCAGCCATCATTGATACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000023026_CASSETTE3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0050123=AMP-binding=FE(11.1=100)
A:
PF0050123=AMP-binding=FE(10.8=100)
C2:
PF0050123=AMP-binding=FE(10.0=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTTCATAAGCGAGCAGAGAGG
R:
CTGTATCAATGATGGCTGGCC
Band lengths:
204-326
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types