GgaEX0008724 @ galGal3
Exon Skipping
Gene
ENSGALG00000006139 | DIP2B
Description
NA
Coordinates
chrE22C19W28_E50C23:136368-138270:-
Coord C1 exon
chrE22C19W28_E50C23:138147-138270
Coord A exon
chrE22C19W28_E50C23:137026-137147
Coord C2 exon
chrE22C19W28_E50C23:136368-136479
Length
122 bp
Sequences
Splice sites
3' ss Seq
CAGCCTGTGTGTCCTTGCAGGCA
3' ss Score
9.89
5' ss Seq
GAAGTGAGT
5' ss Score
7.97
Exon sequences
Seq C1 exon
GGAACTGCTGTGTGTACAGCCACCTGCCTTCAGTTGCACAAAAAAGCTGAGAGAATTGCATCAGTGCTCTGTGACAAAGGACATCTCAATGCAGGAGACAACGTGGTGCTTCTTTATCCTCCTG
Seq A exon
GCATTGAGCTAATCACCGCGTTCTATGGCTGTTTGTATGCTGGCTGCATCCCTGTGACGGTGAGACCACCTCATGCTCAGAGCCTCACTGCTACTCTGCCCACTGTACGAATGATCGTGGAA
Seq C2 exon
GTCAGCAAAGCTGCCTGTATTCTTACAACTCAGACCTTAATGAGACTACTGAAATCCAGAGAGGCAGCTGCTGCTGTAGATGTGAAAACCTGGCCGACCATCATTGATACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006139-'29-34,'29-33,32-34
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0050123=AMP-binding=FE(8.6=100)
A:
PF0050123=AMP-binding=FE(8.4=100)
C2:
PF0050123=AMP-binding=FE(7.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGTGTGTACAGCCACCTGC
R:
CTGTATCAATGATGGTCGGCC
Band lengths:
229-351
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]