HsaEX6066503 @ hg38
Exon Skipping
Gene
ENSG00000066084 | DIP2B
Description
disco interacting protein 2 homolog B [Source:HGNC Symbol;Acc:HGNC:29284]
Coordinates
chr12:50721273-50724886:+
Coord C1 exon
chr12:50721273-50721396
Coord A exon
chr12:50723202-50723323
Coord C2 exon
chr12:50724775-50724886
Length
122 bp
Sequences
Splice sites
3' ss Seq
CAGGGTCCTTTGTCTTGCAGGCA
3' ss Score
9.22
5' ss Seq
GATGTAAGT
5' ss Score
9.11
Exon sequences
Seq C1 exon
GGAACCACTGTATGCACAGCCAGCTGCCTTCAGCTTCATAAGCGAGCAGAGAGGATTGCATCTGTTCTTGGTGATAAGGGACATCTAAATGCAGGAGATAATGTGGTGTTGCTCTATCCACCTG
Seq A exon
GCATTGAGTTAATCGCCGCCTTCTATGGCTGCCTGTATGCGGGCTGTATACCTGTGACCGTCAGACCTCCACATGCTCAGAACCTCACGGCCACGCTGCCCACTGTCCGAATGATTGTTGAT
Seq C2 exon
GTCAGCAAAGCAGCCTGTATTCTCACCAGTCAGACCCTAATGAGGCTACTGAGGTCCCGAGAGGCAGCAGCAGCTGTGGATGTGAAAACCTGGCCAACCATCATTGACACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000066084-'58-70,'58-69,60-70
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0050123=AMP-binding=FE(8.6=100)
A:
PF0050123=AMP-binding=FE(8.4=100)
C2:
PF0050123=AMP-binding=FE(7.8=100)
Main Skipping Isoform:
ENST00000301180fB13809
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGTATGCACAGCCAGCTGC
R:
CTGTGTCAATGATGGTTGGCC
Band lengths:
229-351
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains