DreEX6081097 @ danRer10
Exon Skipping
Gene
ENSDARG00000005350 | dip2ba
Description
DIP2 disco-interacting protein 2 homolog Ba (Drosophila) [Source:ZFIN;Acc:ZDB-GENE-040426-2305]
Coordinates
chr23:27444028-27446512:-
Coord C1 exon
chr23:27446389-27446512
Coord A exon
chr23:27444635-27444756
Coord C2 exon
chr23:27444028-27444139
Length
122 bp
Sequences
Splice sites
3' ss Seq
TTGTTTCTTCTTCCCTGCAGGCA
3' ss Score
12.42
5' ss Seq
GATGTGAGT
5' ss Score
7.77
Exon sequences
Seq C1 exon
GGTGTAGCAGTGAGCACGGCCACGTGTTCACAACTGCACAAGAGAGCAGAGAAGATCACAGCGGCCTTGTTGGAAAGAGGAGGAATTAACACTGGAGACAACGTAGTACTGCTTTATCCTCCTG
Seq A exon
GCATAGATCTAATCGCCTCCTTTTATGGCTGTCTGTATGCTGGCTGTATTCCAGTCACTGTCAGGCCTCCTCATCCACAGAATCTCTCTGCAACTCTCCCCACTGTCCGAATGATCATAGAT
Seq C2 exon
GTGAGCAAAGCAGCCTGTATCCTCACAACGCAGACCCTGATGAAGACATTGAGGTCTAAAGAAGCGGCAGCCAGTGTGAATGTGAAGACGTGGCCAAATATCATTGACACGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000005350-'35-31,'35-30,36-31=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.024 C2=0.000
Domain overlap (PFAM):
C1:
PF0050123=AMP-binding=FE(8.6=100)
A:
PF0050123=AMP-binding=FE(8.4=100)
C2:
PF0050123=AMP-binding=FE(7.8=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGGCCACGTGTTCACAACT
R:
CGTGTCAATGATATTTGGCCACG
Band lengths:
219-341
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]