RnoEX0028278 @ rn6
Exon Skipping
Gene
ENSRNOG00000015085 | Dmpk
Description
DM1 protein kinase [Source:RGD Symbol;Acc:1309825]
Coordinates
chr1:79993930-79997373:+
Coord C1 exon
chr1:79993930-79994015
Coord A exon
chr1:79996436-79996547
Coord C2 exon
chr1:79997210-79997373
Length
112 bp
Sequences
Splice sites
3' ss Seq
TAGCCTCTTCCTCTTCTCAGAGA
3' ss Score
7.94
5' ss Seq
GCGGTGAGT
5' ss Score
10.49
Exon sequences
Seq C1 exon
GAGACACTGTCCGACATGCAGGAAGACATGGCACTCGGGGTGCACCTGCCTTTTGTGGGTTACTCCTACTCTTGCATGGCCTCAAG
Seq A exon
AGACAATCAGGTCACGGACCCCACCCCTATGGAACTAGAGGCCCTGCAGTTGCCTGTGTCAGACTTGCAAGGGCTTGACTTGCCGCCCCCCGTGTCCCCACCGGATCAAGCG
Seq C2 exon
GCTGAAGAGGCTGACCCCGCGGCTGTCCCTGTCCCTCCGGCTGAGACAGAGACCATGGTGACGCTGCGGGAGCTCCAGGAAGCCTTGGAAGAAGAGGTTCTCACCCGGCAGAGCCTGAGCCGCGAGCTGGAGGCCATCCGTACCGCTAACCAGAACTTCTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000015085-'16-23,'16-21,18-23
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.172 A=0.974 C2=0.982
Domain overlap (PFAM):
C1:
NO
A:
PF104814=CENP-F_N=PU(6.2=13.2)
C2:
PF104814=CENP-F_N=FE(67.5=100),PF088265=DMPK_coil=PU(50.8=56.4)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGACACTGTCCGACATGCAG
R:
TGGAGAAGTTCTGGTTAGCGG
Band lengths:
249-361
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]