RnoEX0035591 @ rn6
Exon Skipping
Gene
ENSRNOG00000017063 | Fcna
Description
ficolin A [Source:RGD Symbol;Acc:621221]
Coordinates
chr3:2852021-2852609:-
Coord C1 exon
chr3:2852556-2852609
Coord A exon
chr3:2852350-2852385
Coord C2 exon
chr3:2852021-2852056
Length
36 bp
Sequences
Splice sites
3' ss Seq
AACGCCCCTTCTATCTACAGGAG
3' ss Score
10.22
5' ss Seq
AAGGTGAGC
5' ss Score
9.6
Exon sequences
Seq C1 exon
GGGAACGGGGCTTACAGGGCAGCCCAGGGAAGATGGGACCCGCCGGCAGCAAAG
Seq A exon
GAGAGCCAGGAACCATGGGGCCCCCAGGAGTCAAAG
Seq C2 exon
GGGAGAAAGGAGAGAGAGGAACTGCATCACCACTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000017063-'2-4,'2-2,3-4
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=0.923
Domain overlap (PFAM):
C1:
PF0139113=Collagen=FE(29.5=100)
A:
PF0139113=Collagen=FE(19.7=100)
C2:
PF0139113=Collagen=FE(19.7=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAACGGGGCTTACAGGGCA
R:
CCAGTGGTGATGCAGTTCCTC
Band lengths:
88-124
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]