RnoEX0035906 @ rn6
Exon Skipping
Gene
ENSRNOG00000025074 | Fgg
Description
fibrinogen gamma chain [Source:RGD Symbol;Acc:2613]
Coordinates
chr2:181992304-181994514:+
Coord C1 exon
chr2:181992304-181992581
Coord A exon
chr2:181993732-181993780
Coord C2 exon
chr2:181994313-181994514
Length
49 bp
Sequences
Splice sites
3' ss Seq
AAGATAATTCCCTTCAACAGACT
3' ss Score
4.77
5' ss Seq
CAGGTCAGC
5' ss Score
7.16
Exon sequences
Seq C1 exon
CACCGCGGACTATGCCATGTTCAGGGTGGGTCCTGAATCCGACAAATACCGCCTGACCTATGCCTACTTCATTGGCGGAGATGCCGGGGATGCCTTCGACGGCTACGATTTTGGTGATGATCCCAGTGACAAGTTTTTCACATCCCACAACGGCATGCACTTCAGTACCTGGGACAATGACAACGACAAGTTCGAAGGCAACTGTGCTGAGCAGGATGGATCTGGCTGGTGGATGAACAAGTGTCACGCTGGCCACCTCAATGGAGTTTATTACCAAG
Seq A exon
ACTCTCCATTGGAGATGGGCAGCAACATCACATGGGAGGATCCAAACAG
Seq C2 exon
GTTGGAGACATGTAAAGAACATTTCCAAGGTGATTTGCTCTTTTAACGGACTTTATCCAAGCAGAGAGATATATTTTTCCTATGAGACCATGGAACCTCACTTCCTTTACAGAGTTAATGGGATCCATGATGCAAACTCCATTAGCAGTTTTATGCTGGCGATAATTTATCTACATGCATTTCAATAAACATTTTGTTTCCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000025074-'12-17,'12-16,13-17
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.011 A=0.175 C2=1.000
Domain overlap (PFAM):
C1:
PF0014713=Fibrinogen_C=FE(38.6=100)
A:
PF0014713=Fibrinogen_C=PD(15.8=66.7)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGGCCACCTCAATGGAGTTT
R:
GGAAGTGAGGTTCCATGGTCT
Band lengths:
135-184
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]