BtaEX6071128 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000006745 | FGG
Description
Bos taurus fibrinogen gamma chain (FGG), mRNA. [Source:RefSeq mRNA;Acc:NM_173911]
Coordinates
chr17:2828446-2830960:+
Coord C1 exon
chr17:2828446-2828723
Coord A exon
chr17:2830048-2830217
Coord C2 exon
chr17:2830740-2830960
Length
170 bp
Sequences
Splice sites
3' ss Seq
AGATCTATGGTTTGTTTCAGGTG
3' ss Score
8.53
5' ss Seq
CAGGTCGGA
5' ss Score
5.59
Exon sequences
Seq C1 exon
CACTGCAGATTATGCTTCATTCAAGGTGACAGGTGAAAATGACAAATACCGCCTGACATATGCTTACTTCATTGGTGGAGATGCTGGAGATGCATTTGATGGCTACGATTTTGGCGATGATTCTAGTGACAAGTTTTTCACATCCCATAATGGCATGCAGTTCAGTACTTGGGACAGTGACAATGATAAGTATGATGGCAACTGTGCTGAACAGGATGGATCTGGTTGGTGGATGAACAAATGTCACGCTGGCCACCTCAATGGAGTTTATTATCAAG
Seq A exon
GTGGCACTTACTCAAAAACATCTACTCCTAATGGTTATGATAATGGCATTATTTGGGCCACATGGAAATCCCGGTGGTATTCCATGAAGAAAACCACCATGAAGATAATCCCACTTAACAGACTTGCCATCGGAGAAGGACAGCAGCACCAACTGGGGGGAGCCAAACAG
Seq C2 exon
GCTGGAGACGTATAAAAGACCATTTCAAAAGTGATTTACTTTTTTAAAGAACTTTATCTGAAAAGAAAAAGATAATATTTTTCCTATGGGACAATGGACTTGCAAAGCCTCACTTCACTTTAAAAGTAAAAAGAACCCATGTTGAGAACTCCACTAACAGTTTTATGCCGGTGATAATTTATCTACATACCATTTCAATAAATATTTTGTTTCCTAAGACT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000006745-'7-17,'7-16,8-17=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.011 A=0.133 C2=1.000
Domain overlap (PFAM):
C1:
PF0014713=Fibrinogen_C=FE(38.6=100)
A:
PF0014713=Fibrinogen_C=PD(15.8=66.7)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGCATGCAGTTCAGTACTTGG
R:
AAGTGAGGCTTTGCAAGTCCA
Band lengths:
243-413
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]