GgaEX1025037 @ galGal4
Exon Skipping
Gene
ENSGALG00000009268 | FGG
Description
fibrinogen, gamma chain precursor [Source:RefSeq peptide;Acc:NP_990320]
Coordinates
chr4:19803833-19807012:-
Coord C1 exon
chr4:19806735-19807012
Coord A exon
chr4:19806210-19806373
Coord C2 exon
chr4:19803833-19805824
Length
164 bp
Sequences
Splice sites
3' ss Seq
GCTTGAACTGCTATTTTTAGGTG
3' ss Score
6.07
5' ss Seq
CAGGTTTGA
5' ss Score
5.11
Exon sequences
Seq C1 exon
CACTGCTGACTATGCCGTGTTCAAAGTGGGAACTGAAGAAGACAAGTACAGACTGACCTATGCCTACTTTATTGGTGGCGAAGCTGGAGATGCTTTTGATGGCTTTAATTTTGGAGATGATCCAAGTGACAAATCCTATACCTACCATAATGGCATGCGCTTCAGCACCTTTGATAATGACAATGACAACTTTGAGGGCAACTGTGCTGAGCAAGATGGATCTGGATGGTGGATGAATAGATGCCATGCTGGTCACCTCAATGGACAATATTATATAG
Seq A exon
GTGGTGTGTACTCTAGAGATACTGGTACAAATTCATATGACAATGGCATTATATGGGCAACATGGCGTGACCGATGGTACTCCATGAAGAAAACTACAATGAAAATCATCCCATTCAACAGACTCTCAATAGATGGACAGCAGCACTCAGGAGGCCTCAAGCAG
Seq C2 exon
GTTGGAGACTCATAAAGGGGCAATTTAATAAAGACTGATCTGAATGGAGAAAATAAATCTTTTATTTGTACGACACTGAACTTATCTCACCTTCCACAATTTGGACATCAGTGTTGTGAAATGTCATCGACTATAAAATGCACAACAGTTTTCCTTGAGCAGCGCTTACCTCTTTACATGGTTATTTTTTCTGTACACATTCCCAATAAATTTTTGATTATTACAGAAGAGCTGAGTTTGCTATTTGTGTTCTGCTGTTGGCCGAACACAACACAGTAAACACTGTGACTGCTGGAAGGGTACTCTGAACAAATCTGGTTCAGTTTTTCCTTCTCTTTATTTAGAATTATGTGCTGGAGCTATTTCTCCATAAAACATGGCTAGCTTTCAACAGTCTTCACTTTGTTTTCTGATGAAACTGTCAATTTGTGACACAGACCAAAGTACACAGCAACTTGAAAGGACCTAGTTTGCTGCTGGAGCCGCTTAAACAAACATAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009268_MULTIEX1-8/8=7-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.011 A=0.109 C2=1.000
Domain overlap (PFAM):
C1:
PF0014713=Fibrinogen_C=FE(38.6=100)
A:
PF0014713=Fibrinogen_C=PD(15.8=69.1)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCTGAGCAAGATGGATCTGG
R:
GGTAAGCGCTGCTCAAGGAAA
Band lengths:
244-408
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]